GBrowse Details

Vigan.01G526200.01

Basic Information:
Name: Vigan.01G526200.01
Multiple alignment
Variant Information
Position: Chr01:65051282..65055591 (+ strand)
Length: 4310
Functional Information:
Description: Similar to RING finger and CHY zinc finger domain-containing protein 1-like. [XP_004486052.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Rubredoxin-type fold (IPR004039)
Zinc finger, CHY-type (IPR008913)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, CTCHY-type (IPR017921)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.77,22.83,8.67,9.27,16.72,10.55,8.13,7.97
Arabidopsis thaliana homolog: AT5G18650.1
Automatic updates:
Name: NM_001252907 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RING finger and CHY zinc finger domain-containing protein 1-like (LOC100812839), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254573 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RING finger and CHY zinc finger domain-containing protein 1-like (LOC100792038), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:65051282..65052256 (+ strand)
Length: 975
Type: five_prime_UTR
Position: Chr01:65052257..65052306 (+ strand)
Length: 50
Type: CDS
Position: Chr01:65052408..65052495 (+ strand)
Length: 88
Type: CDS
Position: Chr01:65052593..65052649 (+ strand)
Length: 57
Type: CDS
Position: Chr01:65052770..65052802 (+ strand)
Length: 33
Type: CDS
Position: Chr01:65052946..65053023 (+ strand)
Length: 78
Type: CDS
Position: Chr01:65053181..65053224 (+ strand)
Length: 44
Type: CDS
Position: Chr01:65053318..65053358 (+ strand)
Length: 41
Type: CDS
Position: Chr01:65053973..65054055 (+ strand)
Length: 83
Type: CDS
Position: Chr01:65054179..65054270 (+ strand)
Length: 92
Type: CDS
Position: Chr01:65054364..65054433 (+ strand)
Length: 70
Type: CDS
Position: Chr01:65054579..65054620 (+ strand)
Length: 42
Type: CDS
Position: Chr01:65055000..65055125 (+ strand)
Length: 126
Type: CDS
Position: Chr01:65055126..65055591 (+ strand)
Length: 466
Type: three_prime_UTR


>Vigan.01G526200.01
ATTTTTTTCT GTCAAAATAC TTATTTCCTT AACAGTTATA GTTAGATTAG TCGCAAGAGA AGGTTTTTAC GTTTAAGATG
TAGATTTTTA AATAGACGGT TGAGATTTTT TTCTCTTTTA TCTTTCCGAA TTTGTTCCCG TCTATTCTCT CTCCTTCAGG
TGCGTATTTT ACGCTATCGC CGCCATGTCG ACAGCGTCGC TGCCAGACAG CCCCACCAGA TCTGTAACTA CCACAACACG
GTGATGCCTC CGCTGTAACC ACAACAATCC ACTACCGGAA TCAGAAAAAG ATCATCAGAA ACGGAAACAA CCGCTGGCCT
TCAATTCCCC GTTGCAATTT AAAGAAATAG GAAATACTCG TGGTTTGGGG ACAGACACTC GCATGTACCT CACCGCCTAG
GTATTTTCAA AATCAAACAA CAAATAAACA ACCATTCGTC GTTGAAATCA ATTTAAGTCA TTCTAATTCT AATGGAATTT
TGGAGTTGGC TGTGAATGCT GGACTCGATA ACACGAAGAA CATGATTAAC CCTAGCACGT CACGTGTTGA TTCTGGTGAG
AAAAGAGGAT GAGGCCAGAG GGCAAATAGG GAATAAGAAA AAAAAAACCT TGATCTTTGA TCGGGAAAGA GTAAATCTAA
ACCCTAGAAT CTGTGACGAT TGGGTTGGTT TTCTGGAATC CTCTCTTGTT GAAGCCACCC TTGTTGTCTG CCCTCTCCCC
CTCCCTCTCT CTCTCTCTCT CTCATCCCAG GTGGCCACAA TCTATTACTG CTCAAAACCG AAGCAGAGAA AATATTTGTT
TCATATTATT ATATTGCATT TAAAAAATGA AAATGGTGTC GTGTTTGTGA AAGAGACTAC TCCATTTTTA ACCCTTTCAC
TTTTGGGAAT CACGGCACGG CATAATCTAA TAAATTCCCA ACCAAGAAAC TCTCATCTTC CCTTTCTCTG TCTCGCGCAG
AGGAAACACC AACTCATGGA AGGTTCTGTC AACGAACGTC TTGATTTTGG GAAGATGAAA TACGGGTGCA AGCATTACAG
GAGAAGATGC AGGATACGTG CCCCCTGCTG CAACGAGATC CATTCATGCC GTCACTGTCA CAACGAGGAA GCGAGTTTGT
CGAAGAATTC ATTTGATCGC CACGAACTCG TTCGCCAAGA TGTTAAACAA GTTGTTTGTT CAGTTTGTGA CACTGAGCAA
TCTGTCGCTC AAGTTTGCAC TAACTGTGGC GTCAAAATGG GAGAATATTT CTGCAACATA TGTAAATTCT TCGATGATGA
TACAGAGAAA CAGCAGTTTC ATTGTGATGA TTGCGGGATC TGCAGGGTTG GTGGTCGGGA AAATTTTTTC CACTGCAAGA
AGTGTGGGTC TTGTTATTCA ATTGGTCTGC GTGATAATCA TTTATGTGTG GAGAACTCAA TGAGGCATCA CTGCCCCATT
TGTTATGAGT ATCTATTTGA TTCATTGAAA GACACGGTTG TTATGAAATG TGGTCATACA ATGCACCAAG AATGTTACCA
CGAGATGGTA AATCGTGATA GGTATTGCTG TCCCATATGC TCCAAGTCGG TGGTGGACAT GTCCAGGACG TGGAAGAGAA
TTGATGAAGA GATTGAAGCA TCTATCATGC CTGAAGATTA TCGATACAGG AAGGTCTGGA TACTATGTAA CGACTGCAAT
GACACAACAG AAGTTAACTT CCATATTCTT GGCCATAAAT GCGGTCATTG CAATTCATAT AATACTCGCT CAATTGCGCC
TCCAGTTCTT CCTCAATGAT TGGATTCTTG TGATTCAACT TGAACAGTAC GAGGGGAAAA AAAATCAAAG TTAGCACATT
GGTTTATTTC AGAGGATTAT TGGATTAAAT TCAGCATCAA CAATAATTAT TATGTTGTGT CCTAGATAGT TTCTTCAGGT
TATTTTTCGA CCACCAACAT GTGGAGTGGT ATTGGTTGTC TCTTGGTTTT TGGACAGACA TAAATATCTT CATGCTATAC
TGTAATAGGG GGGGAACTTT TTTCTCCCTC TAAATTGCAG GTAATAGTAG TGATGATGTA TTGATACTTG ATGATTGATT
GCATTGTCTG CCGCAGTGCT TTTTTTTAAT TTGGTTGATG CTATTTGATC ATGTTTTAGG TCTGTCTCGC AGATTGGTAG
ACAGTGATTG TTATTAGTTT TGATTACTCT ATTCCCAGCC ATGATTTCAT AAAAAGCAGA AATAGTCGTC TTTTTGCTAT
TGACT

>Vigan.01G526200.01
ATGGAAGGTT CTGTCAACGA ACGTCTTGAT TTTGGGAAGA TGAAATACGG GTGCAAGCAT TACAGGAGAA GATGCAGGAT
ACGTGCCCCC TGCTGCAACG AGATCCATTC ATGCCGTCAC TGTCACAACG AGGAAGCGAG TTTGTCGAAG AATTCATTTG
ATCGCCACGA ACTCGTTCGC CAAGATGTTA AACAAGTTGT TTGTTCAGTT TGTGACACTG AGCAATCTGT CGCTCAAGTT
TGCACTAACT GTGGCGTCAA AATGGGAGAA TATTTCTGCA ACATATGTAA ATTCTTCGAT GATGATACAG AGAAACAGCA
GTTTCATTGT GATGATTGCG GGATCTGCAG GGTTGGTGGT CGGGAAAATT TTTTCCACTG CAAGAAGTGT GGGTCTTGTT
ATTCAATTGG TCTGCGTGAT AATCATTTAT GTGTGGAGAA CTCAATGAGG CATCACTGCC CCATTTGTTA TGAGTATCTA
TTTGATTCAT TGAAAGACAC GGTTGTTATG AAATGTGGTC ATACAATGCA CCAAGAATGT TACCACGAGA TGGTAAATCG
TGATAGGTAT TGCTGTCCCA TATGCTCCAA GTCGGTGGTG GACATGTCCA GGACGTGGAA GAGAATTGAT GAAGAGATTG
AAGCATCTAT CATGCCTGAA GATTATCGAT ACAGGAAGGT CTGGATACTA TGTAACGACT GCAATGACAC AACAGAAGTT
AACTTCCATA TTCTTGGCCA TAAATGCGGT CATTGCAATT CATATAATAC TCGCTCAATT GCGCCTCCAG TTCTTCCTCA
ATGA

>Vigan.01G526200.01
MEGSVNERLD FGKMKYGCKH YRRRCRIRAP CCNEIHSCRH CHNEEASLSK NSFDRHELVR QDVKQVVCSV CDTEQSVAQV
CTNCGVKMGE YFCNICKFFD DDTEKQQFHC DDCGICRVGG RENFFHCKKC GSCYSIGLRD NHLCVENSMR HHCPICYEYL
FDSLKDTVVM KCGHTMHQEC YHEMVNRDRY CCPICSKSVV DMSRTWKRID EEIEASIMPE DYRYRKVWIL CNDCNDTTEV
NFHILGHKCG HCNSYNTRSI APPVLPQ*