GBrowse Details

Vigan.01G532500.01

Basic Information:
Name: Vigan.01G532500.01
Multiple alignment
Variant Information
Position: Chr01:65490520..65494501 (- strand)
Length: 3982
Functional Information:
Description: Similar to Uncharacterized protein. [G7KQU7, Medicago truncatula]
GO: Biological Process: iron-sulfur cluster assembly (GO:0016226)
Molecular Function: structural molecule activity (GO:0005198)
Molecular Function: iron-sulfur cluster binding (GO:0051536)
InterPro: FeS cluster biogenesis (IPR000361)
FeS cluster insertion protein (IPR016092)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.56,13.74,13.76,22.77,16.38,6.63,14.61,12.21
Arabidopsis thaliana homolog: AT5G03905.1
Automatic updates:
Name: NM_001250427 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527785 (LOC100527785), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:65490520..65490786 (- strand)
Length: 267
Type: three_prime_UTR
Position: Chr01:65490787..65490855 (- strand)
Length: 69
Type: CDS
Position: Chr01:65492387..65492495 (- strand)
Length: 109
Type: CDS
Position: Chr01:65492574..65492704 (- strand)
Length: 131
Type: CDS
Position: Chr01:65494240..65494398 (- strand)
Length: 159
Type: CDS
Position: Chr01:65494399..65494501 (- strand)
Length: 103
Type: five_prime_UTR


>Vigan.01G532500.01
GTTATTGAGG AGTTCACGTT ACATAATACT GTGTGTGAAG CTTTATATTT GAGCATATGA TTTTGAACCC TTACATTTGG
GAGAAAACAC AAGCGACGGA CCAATGATTC GAAGTCTTGC TCTACACTGG GCAGCACGAT TCCGACACAA CCAAAACCTC
CTGCGTCTTT CTTCTTCTTA TGCTTCTCCC GCTACTCTTC ATCATGCCAC TCCCTCTTCT TCTTCCGCTG AGCCCGTTCA
CATCACCCCA AACTGTGTTC GAAAAATAAA GGAACTGGAA GCAAGTGAAT CATCGACTAG TGGAAAAATG CTTCGATTGA
GTGTGGAAAC TGGTGGATGT TCTGGATTCC AATATGTTTT TAATCTTGAT GACAGAATCA ACTCAGATGA TAGAGTTTTT
GAGAAAGAAG GAACTAAATT GATCGTTGAC AACATATCAT ACGAATTTGT AAAAGGGGCA ACTGTTGATT ATGTTGAGGA
GCTGATCCGT TCAGCTTTCG TGGTGACTGA AAACCCCAGT GCAGTTGGTG GTTGCAGTTG TAAAAGTTCC TTCATGGTGA
AACAGCTGTG ATTTTGTTTC TCCTTTCTGA CTCTTCATAC ACTGCTCAGA TATTTCTTAT AACCAATTTT CGGTTCTTTG
TACCACTAAA AGACGATTCA TTGAACTCAA GGTAAAGTTT ATTTTGTACA ATGCTCAAAG ATGCAGCTGT TCTAGTAATA
GGTTTATCCA TATCCATAAA AGCAAGTATT TATAGATTCT GCGTCCTTTG GTTTGTTATG CCATGATTTT TTCTCTCTCT
AAACGCTCAT TCAATACGTG TATATGCTGA TACTGATA

>Vigan.01G532500.01
ATGATTCGAA GTCTTGCTCT ACACTGGGCA GCACGATTCC GACACAACCA AAACCTCCTG CGTCTTTCTT CTTCTTATGC
TTCTCCCGCT ACTCTTCATC ATGCCACTCC CTCTTCTTCT TCCGCTGAGC CCGTTCACAT CACCCCAAAC TGTGTTCGAA
AAATAAAGGA ACTGGAAGCA AGTGAATCAT CGACTAGTGG AAAAATGCTT CGATTGAGTG TGGAAACTGG TGGATGTTCT
GGATTCCAAT ATGTTTTTAA TCTTGATGAC AGAATCAACT CAGATGATAG AGTTTTTGAG AAAGAAGGAA CTAAATTGAT
CGTTGACAAC ATATCATACG AATTTGTAAA AGGGGCAACT GTTGATTATG TTGAGGAGCT GATCCGTTCA GCTTTCGTGG
TGACTGAAAA CCCCAGTGCA GTTGGTGGTT GCAGTTGTAA AAGTTCCTTC ATGGTGAAAC AGCTGTGA

>Vigan.01G532500.01
MIRSLALHWA ARFRHNQNLL RLSSSYASPA TLHHATPSSS SAEPVHITPN CVRKIKELEA SESSTSGKML RLSVETGGCS
GFQYVFNLDD RINSDDRVFE KEGTKLIVDN ISYEFVKGAT VDYVEELIRS AFVVTENPSA VGGCSCKSSF MVKQL*