GBrowse Details

Vigan.01G533100.01

Basic Information:
Name: Vigan.01G533100.01
Multiple alignment
Variant Information
Position: Chr01:65524025..65527877 (+ strand)
Length: 3853
Functional Information:
Description: Similar to Uncharacterized protein. [Q9XE60, Glycine max]
GO: Biological Process: deoxyribonucleoside diphosphate metabolic process (GO:0009186)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Ribonucleotide reductase small subunit (IPR000358)
Ferritin-like superfamily (IPR009078)
Ribonucleotide reductase-related (IPR012348)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.41,3.68,2.81,12.99,4.31,4.76,4.07,5.26
Arabidopsis thaliana homolog: AT3G23580.1
Automatic updates:
Name: NM_001250804 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribonucleotide reductase small subunit (LOC547521), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:65524025..65524213 (+ strand)
Length: 189
Type: five_prime_UTR
Position: Chr01:65524214..65524397 (+ strand)
Length: 184
Type: CDS
Position: Chr01:65525262..65525422 (+ strand)
Length: 161
Type: CDS
Position: Chr01:65525747..65525795 (+ strand)
Length: 49
Type: CDS
Position: Chr01:65525874..65526000 (+ strand)
Length: 127
Type: CDS
Position: Chr01:65526563..65526628 (+ strand)
Length: 66
Type: CDS
Position: Chr01:65526727..65526843 (+ strand)
Length: 117
Type: CDS
Position: Chr01:65526971..65527133 (+ strand)
Length: 163
Type: CDS
Position: Chr01:65527207..65527277 (+ strand)
Length: 71
Type: CDS
Position: Chr01:65527572..65527686 (+ strand)
Length: 115
Type: CDS
Position: Chr01:65527687..65527877 (+ strand)
Length: 191
Type: three_prime_UTR


>Vigan.01G533100.01
AAAAAGTATC CCTGACAGTT AAAACAAAGT GAAACATAGG CAGAAACAAA CAAAACTGCA AATCCGAATT AGTATAGGGC
TTTGTTATCG GTGTCAGCAA CAAACAACTA AGGTCAGCGT CCTCTGCTTT CTGATAAGGG TTTTTGCAGG GTTTATTCTT
CCTTCAATTC TATTATTTCA TCGAAAAAAA TGGGTTCTTT GGAAAATGGA ACACACAAAG CAAGAGAGGA ACAAGAACAA
GAACAGGAAC AGGAACAGGA AGTAGAACAA GAACCAATAC TAGTGGAGCA AAGTCAGAGG TTTTGCATGT TCCCCATTCG
CTACAAGCAA ATTTGGGAGA TGTACAAGAA GGCTGAAGCA AGCTTTTGGA CTGCTGAAGA GGTTGATCTC TCCCATGATA
TACAACATTG GGAGACTTTG TCTGTCTCTG AGAAGCACTT CATAACACAT GTCCTGGCTT TTTTTGCTGC TTCTGATGGA
ATTATCTTGG AGAATTTGGC TGCAAGGTTT TTGAGCGATG TTCAAATCCC GGAGGCTCGG GCGTTTTATG GGTTTCAGAT
AGCAATGGAG AATATTCATT CTGAAATGTA CAGCTTGCTG CTGGAGACAT ATATTAAAGA TTCAAGAGAG AAATATAGAT
TGTTCAATGC AATTGAAAAT TTGCCTTGTG TTGCAAGGAA GGCTGAATGG GCATTGAGTT GGATTCGTAG TTCCACTTCA
TTTGCAGAGA GACTTGTTGC TTTTGCATGT GTTGAAGGGA TATTTTTCTC AGGAAGCTTC TGCTCCATAT TCTGGCTTAA
AAAGAGAGGA CTGATGCCAG GTTTGACATT CTCAAATGAG CTAATCTCTA GGGATGAGGG TCTTCACTGT GATTTTGCTT
GTCTTTTGTA CAGTTTGTTA CGAAAGCCTC TAAGTTCTGA TCGGGTTCAT AAGCTTGTAC ACGAAGCTGT AGAAATTGAA
ACTGAGTTTG TCTGTGAGGC CCTCCCTTGT GCGTTGATTG GCATGAACTC AACACTCATG AGCCAGTACA TAAAATTTGT
AGCTGACAGG CTAATGGCTG CTTTGGGGTA CCAAAGAAAG TATAATGTGG AAAATCCCTT TGATTGGATG GAGTTTATCT
CTTTGCAAGG GAAGGCTAAC TTTTTCGAGA GAAGGGTGGG TGATTATCAA AAAGCTTCTG TGATGTCAAA CCTCCAAGAT
GCGGGGAAAA ACTTTGTTTT CAAGCTTGAT GAGGACTTCT AGCCATCATT GATTTGTATC AGTTTCTTCA ATTATTCTGG
GGATGTTGAA TTGAGCATCG AGATTTTATT TACCAGTATT CTTTTTTTCA GTAACATGAT TAGTTTACAC CAACACAAAT
TTGATTCCTG GGAGATATCT TTACTCAGGT TATTTGTAAT AATATGTTTG TTTCTATTTG TTATTGAGTG ACA

>Vigan.01G533100.01
ATGGGTTCTT TGGAAAATGG AACACACAAA GCAAGAGAGG AACAAGAACA AGAACAGGAA CAGGAACAGG AAGTAGAACA
AGAACCAATA CTAGTGGAGC AAAGTCAGAG GTTTTGCATG TTCCCCATTC GCTACAAGCA AATTTGGGAG ATGTACAAGA
AGGCTGAAGC AAGCTTTTGG ACTGCTGAAG AGGTTGATCT CTCCCATGAT ATACAACATT GGGAGACTTT GTCTGTCTCT
GAGAAGCACT TCATAACACA TGTCCTGGCT TTTTTTGCTG CTTCTGATGG AATTATCTTG GAGAATTTGG CTGCAAGGTT
TTTGAGCGAT GTTCAAATCC CGGAGGCTCG GGCGTTTTAT GGGTTTCAGA TAGCAATGGA GAATATTCAT TCTGAAATGT
ACAGCTTGCT GCTGGAGACA TATATTAAAG ATTCAAGAGA GAAATATAGA TTGTTCAATG CAATTGAAAA TTTGCCTTGT
GTTGCAAGGA AGGCTGAATG GGCATTGAGT TGGATTCGTA GTTCCACTTC ATTTGCAGAG AGACTTGTTG CTTTTGCATG
TGTTGAAGGG ATATTTTTCT CAGGAAGCTT CTGCTCCATA TTCTGGCTTA AAAAGAGAGG ACTGATGCCA GGTTTGACAT
TCTCAAATGA GCTAATCTCT AGGGATGAGG GTCTTCACTG TGATTTTGCT TGTCTTTTGT ACAGTTTGTT ACGAAAGCCT
CTAAGTTCTG ATCGGGTTCA TAAGCTTGTA CACGAAGCTG TAGAAATTGA AACTGAGTTT GTCTGTGAGG CCCTCCCTTG
TGCGTTGATT GGCATGAACT CAACACTCAT GAGCCAGTAC ATAAAATTTG TAGCTGACAG GCTAATGGCT GCTTTGGGGT
ACCAAAGAAA GTATAATGTG GAAAATCCCT TTGATTGGAT GGAGTTTATC TCTTTGCAAG GGAAGGCTAA CTTTTTCGAG
AGAAGGGTGG GTGATTATCA AAAAGCTTCT GTGATGTCAA ACCTCCAAGA TGCGGGGAAA AACTTTGTTT TCAAGCTTGA
TGAGGACTTC TAG

>Vigan.01G533100.01
MGSLENGTHK AREEQEQEQE QEQEVEQEPI LVEQSQRFCM FPIRYKQIWE MYKKAEASFW TAEEVDLSHD IQHWETLSVS
EKHFITHVLA FFAASDGIIL ENLAARFLSD VQIPEARAFY GFQIAMENIH SEMYSLLLET YIKDSREKYR LFNAIENLPC
VARKAEWALS WIRSSTSFAE RLVAFACVEG IFFSGSFCSI FWLKKRGLMP GLTFSNELIS RDEGLHCDFA CLLYSLLRKP
LSSDRVHKLV HEAVEIETEF VCEALPCALI GMNSTLMSQY IKFVADRLMA ALGYQRKYNV ENPFDWMEFI SLQGKANFFE
RRVGDYQKAS VMSNLQDAGK NFVFKLDEDF *