GBrowse Details

Vigan.01G533500.01

Basic Information:
Name: Vigan.01G533500.01
Multiple alignment
Variant Information
Position: Chr01:65589870..65601072 (+ strand)
Length: 11203
Functional Information:
Description: Similar to Uncharacterized protein. [I1KN85, Glycine max]
InterPro: Protein of unknown function DUF1749 (IPR013744)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.69,10.63,5.55,8.56,3.95,6.51,4.55,5.32
Arabidopsis thaliana homolog: AT5G19050.1
Automatic updates:
Name: NM_001254247 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0613 protein PB24D3.06c-like (LOC100786604), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:65589870..65590101 (+ strand)
Length: 232
Type: five_prime_UTR
Position: Chr01:65590102..65590302 (+ strand)
Length: 201
Type: CDS
Position: Chr01:65590668..65590744 (+ strand)
Length: 77
Type: CDS
Position: Chr01:65591876..65591981 (+ strand)
Length: 106
Type: CDS
Position: Chr01:65592711..65592803 (+ strand)
Length: 93
Type: CDS
Position: Chr01:65592908..65592973 (+ strand)
Length: 66
Type: CDS
Position: Chr01:65594461..65594606 (+ strand)
Length: 146
Type: CDS
Position: Chr01:65598799..65598907 (+ strand)
Length: 109
Type: CDS
Position: Chr01:65599809..65599873 (+ strand)
Length: 65
Type: CDS
Position: Chr01:65599996..65600143 (+ strand)
Length: 148
Type: CDS
Position: Chr01:65600144..65601072 (+ strand)
Length: 929
Type: three_prime_UTR


>Vigan.01G533500.01
AGAGTAACTG GTAACAGCAA TCACATTCCG CAAGATTTAC ATGCGCGTGA GAGCTACGCG GTCGCGAGCC GGTGACATTC
TGATCCAAAC TCTGCAGAGC TAACCGGTAA CCTGCTCTGT CATGACGTGG AACTTGGAGG GATCTTCCGT TTTCGTTCTC
GAATCCCGAT ACCACAGTCC GTCCACTACC ATCACATCAT GGCTATAATC TAACGGACCC GCTCATGTGC CAATGAATCC
TTCTCTCACT TCTTCCTCCT CCTCTTCATC TTCGTCCTGG CTCTTTGGAA TCGTTCGACC GGGTCGTTCA AGCAGTTTGA
AGATGTCCAC TAATTCCTCC GCCGTCGCTG CCTCCACCGA CTCCGGCGGT CCCGTCGTCC GCAGAAATCA GTTCCGAGGG
GTTCTTTTCA AGTACGGTCC CAAGTCTATT CAGGTTGCAT TTAAGACTGG CGATTTCAAG CGGCAAGTCA TCTTTATTGG
TGGATTGACC GATGGTTTTC TTGCTACTTC ATACTTGGAA CCTTTGGCAA TTGCTCTGGA CCGTGAGAAT TGGTCATTAG
TTCAATTTCT TATGTCATCT TCTTACAGTG GATATGGCAC CTCCAGTTTG CAACAAGATG CCAAGGAGCT CGATCAGCTG
ATTAATTATT TAATTAACAA AGAGGAATCC GAAGGCGTGG CATTGCTAGG GCATAGTACC GGCTGTCAGG ATATTGTGCA
TTATATGCGC ACAAATTATG CTTGCTCCCG AGCAGTTCGT GCTGCCATCT TTCAGGCTCC TGTCAGTGAT AGGGAATATC
AGGCTACGCT CCCTCACACA GCTTCTATGA TTGACTTGGC TGCTAAGATG ATAAGTGAAG GGCGAGGTTT AGAGTTAATG
CCAAGGGAAG CGGATCCTAG TGCCCCAATA ACTGCCTATA GGTATCACTC CCTATGTTCA TATAATGGTG ATGATGACAT
GTTCAGTTCT GACCTGAGTG AAGACCAGTT GAAGATGAGG CTGGGGCATA TGTCTAACAC ACATTGTCAG GTTATATTTT
CAATGAGTGA CGAATATGTG CCAGATTACG TTGATAAGAA AGCTCTAGTT GAGCGGTTAT GCAGAGCGAT GGGAGGAGCA
GAGAAAGTAG AGATCGAATA TGGAAATCAC TCCCTCTCTA ACAGAGTTGA AGAAGCTGTT GATGCTATTA TTGATTTCTT
AAAAAGAGAG GGACCCAAAG GCTGGGATGA TCCATGGAGT TAATTGGATG TCTCTATCAA TTTTCAATGC CCCCCTTTTT
TTTTTATTGT TATGATAGTT TTGATTTCCT TCTGTCAATC TTTTTTTTTC TCCCATATAT AGTTTTGTTG GGGTAGCTAT
TTGCAGCCTT AGTTTTTTGT TGATATAACA TGTTAATATT TATAATCTCA GAAGAGAAGT GATATATCTG TGTTTTCAAT
TTATTATTTT TTACCCAGGG AACATTTTTC TACAGTTGTA GGCAATTCTG ATGTTTCCAC ATGCAACGGT AAGAGCCTCT
CAGGATTTGC TCTAAGGTGT GTACACATGT AGTGGAATAG AAACCCGTGT TATATTTAGT TGCTAGTATT CGTGCAAAAA
TAATTTCCGA ACTACAAGAT CGACATGAAA ATTAATCATC TTTTTCTGTG AAAATATATA ATTAAGTTCG CATTGTTAAT
TCCTTACACT CGTCAGATCC TGTCAATGTT AATAGTGGTA ATATGCTCAG TTACCTTCGT TCCTTTGCTT CCATTGTTTA
TTCGTCACAT ACCGCTAAAT TGGAGATTGC AGTAATGTGA AGTCTATTCT AAAGTAAGAT TAGTTACCTT GAGTATCCAC
AAATCAAAAT GATTTTTGGT GGTTGGTGAT GGTTTGGTGA AGTTGGTAAC AACTGAGCAG CTGGCCAAAA TTTTCTTTCA
TTGAGGCTAT TATTTTTGGT CAACATTCAC TCTTTTAAGA AGAGCTGCTG TAATATCATT GTATAATGTC CCATTTTATC
ACCTCATTTG GTTCCCATAT GCCCCATGAC CACAGCTTCT TACACTTGCA ACCGTGAGAT AATGTTCTCT ATTCTTCAGG
TTTATTTGAA TTTAATTACG AAATTAATTA AATTATGTTT CTGTAATTCA TGTTATATTT TACCTGAATT GGTGTATAAT
CTCACAATGC GT

>Vigan.01G533500.01
ATGAATCCTT CTCTCACTTC TTCCTCCTCC TCTTCATCTT CGTCCTGGCT CTTTGGAATC GTTCGACCGG GTCGTTCAAG
CAGTTTGAAG ATGTCCACTA ATTCCTCCGC CGTCGCTGCC TCCACCGACT CCGGCGGTCC CGTCGTCCGC AGAAATCAGT
TCCGAGGGGT TCTTTTCAAG TACGGTCCCA AGTCTATTCA GGTTGCATTT AAGACTGGCG ATTTCAAGCG GCAAGTCATC
TTTATTGGTG GATTGACCGA TGGTTTTCTT GCTACTTCAT ACTTGGAACC TTTGGCAATT GCTCTGGACC GTGAGAATTG
GTCATTAGTT CAATTTCTTA TGTCATCTTC TTACAGTGGA TATGGCACCT CCAGTTTGCA ACAAGATGCC AAGGAGCTCG
ATCAGCTGAT TAATTATTTA ATTAACAAAG AGGAATCCGA AGGCGTGGCA TTGCTAGGGC ATAGTACCGG CTGTCAGGAT
ATTGTGCATT ATATGCGCAC AAATTATGCT TGCTCCCGAG CAGTTCGTGC TGCCATCTTT CAGGCTCCTG TCAGTGATAG
GGAATATCAG GCTACGCTCC CTCACACAGC TTCTATGATT GACTTGGCTG CTAAGATGAT AAGTGAAGGG CGAGGTTTAG
AGTTAATGCC AAGGGAAGCG GATCCTAGTG CCCCAATAAC TGCCTATAGG TATCACTCCC TATGTTCATA TAATGGTGAT
GATGACATGT TCAGTTCTGA CCTGAGTGAA GACCAGTTGA AGATGAGGCT GGGGCATATG TCTAACACAC ATTGTCAGGT
TATATTTTCA ATGAGTGACG AATATGTGCC AGATTACGTT GATAAGAAAG CTCTAGTTGA GCGGTTATGC AGAGCGATGG
GAGGAGCAGA GAAAGTAGAG ATCGAATATG GAAATCACTC CCTCTCTAAC AGAGTTGAAG AAGCTGTTGA TGCTATTATT
GATTTCTTAA AAAGAGAGGG ACCCAAAGGC TGGGATGATC CATGGAGTTA A

>Vigan.01G533500.01
MNPSLTSSSS SSSSSWLFGI VRPGRSSSLK MSTNSSAVAA STDSGGPVVR RNQFRGVLFK YGPKSIQVAF KTGDFKRQVI
FIGGLTDGFL ATSYLEPLAI ALDRENWSLV QFLMSSSYSG YGTSSLQQDA KELDQLINYL INKEESEGVA LLGHSTGCQD
IVHYMRTNYA CSRAVRAAIF QAPVSDREYQ ATLPHTASMI DLAAKMISEG RGLELMPREA DPSAPITAYR YHSLCSYNGD
DDMFSSDLSE DQLKMRLGHM SNTHCQVIFS MSDEYVPDYV DKKALVERLC RAMGGAEKVE IEYGNHSLSN RVEEAVDAII
DFLKREGPKG WDDPWS*