GBrowse Details

Vigan.01G543700.01

Basic Information:
Name: Vigan.01G543700.01
Multiple alignment
Variant Information
Position: Chr01:66344084..66345961 (- strand)
Length: 1878
Functional Information:
Description: Similar to Uncharacterized protein. [B0M195, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Short-chain dehydrogenase/reductase, conserved site (IPR020904)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:71.17,15.95,34.64,47.01,18.28,68.61,64.80,25.42
Arabidopsis thaliana homolog: AT4G05530.1
Automatic updates:
Name: NM_001251416 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal short-chain dehydrogenase/reductase family protein (LOC100170726), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:66344084..66344296 (- strand)
Length: 213
Type: three_prime_UTR
Position: Chr01:66344297..66344446 (- strand)
Length: 150
Type: CDS
Position: Chr01:66344518..66344619 (- strand)
Length: 102
Type: CDS
Position: Chr01:66344722..66344847 (- strand)
Length: 126
Type: CDS
Position: Chr01:66344966..66345100 (- strand)
Length: 135
Type: CDS
Position: Chr01:66345518..66345634 (- strand)
Length: 117
Type: CDS
Position: Chr01:66345727..66345855 (- strand)
Length: 129
Type: CDS
Position: Chr01:66345856..66345961 (- strand)
Length: 106
Type: five_prime_UTR


>Vigan.01G543700.01
AAATGTTCAA AGCTAATATA AAAAAGTGGT TAAACGGCAG AAAGGATGGT TGAGTCTGGG TGGTTATGGT GAGTGTGTGT
TAACTTGGAT TGCATCGAAA GTGGAAATGG TGAAGTCAAA GAGATTTGAA GGAAAGGTGG TGATTGTGAC GGCTTCCACG
CAAGGAATCG GTTTAGCCAT AGCCGAGAGG CTTGGCCTCG AAGGTGCATC CGTTGTTATC TCTTCTCGCA AACAGCAAAA
CGTTGACGCG GCGGCGGAAA AACTGAGGGC AAAAGGAATT GAAGTGTTAG GGGTTGTTTG CCATGTTTCT AATCCTCAAC
AACGGAAGGA GTTGATACTC AAAACTGTGC AGAAGTATGG AAAGATAGAT GTTGTTGTGT CCAATGCTGC TGCAAATCCT
TCTGTTGATT CCATCTTGCA AACAAAAGAC ACTGTCCTTG ACAAGCTATG GGAGATAAAT GTCAAAGCTA CTATACTTCT
TTTGAAGGAT GCTGCGCCTC ACTTGCAGAA GGGTTCTTCT GTTGTTATCA TTTCCTCAAT TGCTGGTTAT AACCCGCCAC
CTTCTTTGGC TATGTATGGA GTGACCAAAA CAGCCCTTCT TGGACTTACC AAAGCCCTGG CTGCTGAGAT GGCTCCAGAC
ACTCGTGTAA ACTGTGTTGC TCCTGGTTTT GTGCCGACCA ATTTTGCTTC ATTCATTACA ACTAATGAAG CTGTCAGGAA
AGAGCTTGAA GATAAAACAA TTCTTAAAAG GCTCGGTACA ACAGAAGACA TGGCTGCTGC AACAGCATTT TTGGCATCCG
ACGATGCTTC TTATATAACA GGAGAGACTA TAGTAGTTGC TGGGGGAACG CCTTCAAGGT TGTAGCTTCC GCTATTATTC
TCTCAGTCAA CACATATTTG AAGTTCTTTT TAGCAATAAA TTATTACCTG CTAGTCTGAA CCCATGGGAT ATATATGTTC
ACTTGGTTTG AACAGTGTTT ATTTCAATTT CTTGTTAGTA CCGTAAGGAT ATTATTACTA AGCTATGTTT GGGGTTTATG
AAATAAAAAA GAAAAAAGTA TAGGCTGAAT AGCATAAA

>Vigan.01G543700.01
ATGGTGAAGT CAAAGAGATT TGAAGGAAAG GTGGTGATTG TGACGGCTTC CACGCAAGGA ATCGGTTTAG CCATAGCCGA
GAGGCTTGGC CTCGAAGGTG CATCCGTTGT TATCTCTTCT CGCAAACAGC AAAACGTTGA CGCGGCGGCG GAAAAACTGA
GGGCAAAAGG AATTGAAGTG TTAGGGGTTG TTTGCCATGT TTCTAATCCT CAACAACGGA AGGAGTTGAT ACTCAAAACT
GTGCAGAAGT ATGGAAAGAT AGATGTTGTT GTGTCCAATG CTGCTGCAAA TCCTTCTGTT GATTCCATCT TGCAAACAAA
AGACACTGTC CTTGACAAGC TATGGGAGAT AAATGTCAAA GCTACTATAC TTCTTTTGAA GGATGCTGCG CCTCACTTGC
AGAAGGGTTC TTCTGTTGTT ATCATTTCCT CAATTGCTGG TTATAACCCG CCACCTTCTT TGGCTATGTA TGGAGTGACC
AAAACAGCCC TTCTTGGACT TACCAAAGCC CTGGCTGCTG AGATGGCTCC AGACACTCGT GTAAACTGTG TTGCTCCTGG
TTTTGTGCCG ACCAATTTTG CTTCATTCAT TACAACTAAT GAAGCTGTCA GGAAAGAGCT TGAAGATAAA ACAATTCTTA
AAAGGCTCGG TACAACAGAA GACATGGCTG CTGCAACAGC ATTTTTGGCA TCCGACGATG CTTCTTATAT AACAGGAGAG
ACTATAGTAG TTGCTGGGGG AACGCCTTCA AGGTTGTAG

>Vigan.01G543700.01
MVKSKRFEGK VVIVTASTQG IGLAIAERLG LEGASVVISS RKQQNVDAAA EKLRAKGIEV LGVVCHVSNP QQRKELILKT
VQKYGKIDVV VSNAAANPSV DSILQTKDTV LDKLWEINVK ATILLLKDAA PHLQKGSSVV IISSIAGYNP PPSLAMYGVT
KTALLGLTKA LAAEMAPDTR VNCVAPGFVP TNFASFITTN EAVRKELEDK TILKRLGTTE DMAAATAFLA SDDASYITGE
TIVVAGGTPS RL*