VIGGS:GBrowse

Vigan.01G543900.01

Basic Information:

Name:	Vigan.01G543900.01 Multiple alignment Variant Information
Position:	Chr01:66353920..66356254 (+ strand)
Length:	2335

Functional Information:

Description:	Similar to Small ribosomal subunit protein S13, mitochondrial. [Q8LPW2, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: nucleic acid binding (GO:0003676)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S13 (IPR001892)
	Ribosomal protein S13-like, H2TH (IPR010979)
	Ribosomal protein S13, conserved site (IPR018269)
	30s ribosomal protein S13, C-terminal (IPR027437)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.14,13.78,8.93,5.91,13.40,21.47,4.29,6.17

Automatic updates:

Name:	NM_001249512 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ribosomal protein S13 (RSP13), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	11971146 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001400384 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ribosomal protein S13 (RSP13), mRNA.
PubMed ID:	11971146 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:66353920..66354247 (+ strand)
Length:	328
Type:	five_prime_UTR

Position:	Chr01:66354248..66354307 (+ strand)
Length:	60
Type:	CDS

Position:	Chr01:66354399..66354632 (+ strand)
Length:	234
Type:	CDS

Position:	Chr01:66355136..66355288 (+ strand)
Length:	153
Type:	CDS

Position:	Chr01:66355289..66356254 (+ strand)
Length:	966
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G543900.01
GAGTGGCCAT TTCAGACTTG ACCTAACTTC CCTACAATAA AAGTACAAAA ATAATATCTG GAGTGAGAAG ATATTAAAAA
ATTGAAAGCA GGCAACGGAA TACAGTAGTT TACTTCAAAA TACAATCAAC AAATACAAGT CCTTTCCTTT CCTATACGCC
AATACAGTAT CTGGATCGTC GAAATACAAA GGTTTGGTAT TTTCGTGGTG GCTTCCGACT TCGGCATACG TCTCCTCCCG
CTGCAGTCAT CACACACCAT ACTTGAAAGC ATCTTCTCTT ACCTTTTTCC CTCTCCTCAG TCGCATCTTC AATTCCTCCC
ACTCCAACAT GTTCGGCTCC GCCCGAATCT TCTCCGACGT CGCTCTCCGC CTCCGCCAAA ACTTATCGCT TCGAGGTGTG
CGCGTGCAGA ACATCAACAT CGGAGGCGGT ATGGGAGGCG AGATCCCCGA CAATAAGCGT CTGGAGTACG CTCTCCAGCA
CCTGCACGGA ATAGGGCGCT CGAAAGCGCA CCACATCGTG TGCGAGCTCG GAGTTGAGAA CAAATTCGTG AAGGATCTCA
GCAAGAGGGA ACTCTATTCC ATTCGCGAGT TGCTCGCCAA GTACTTGATC GGAAACGATT TGAAAAAGTG TGTTGAGAGA
GATGTGGTAA GGTTGGTGGG CATTCAGTGC TACCGAGGGA TCAGGCATGT GGATAACTTA CCCTGCCGTG GACAAAGGAC
TCATACGAAT GCACGCACAA GGAGGAGCCG GAAGACTTTC TCTGGATCGA GATAGGTACC GCTTGACAAA CAGATGAGTC
TGGGATGTTG AAATAAGTGA AATCAATGTT CAGATTTACA TGTTCAATCT GCCTTTGTCG GGTTTATCTT TTTCTGCAAG
AGCTTTAATG GTCTTATTCT GCATTTTGGT GGGCTTCTCC AACATTACAG CGTCAGTGCT GTTAAATTTT TCACCTATTC
TCTCCTCATT TGCTGGTAAC CAGAGCTCAA TTATTTTGCA CTCTTTAGTC GTCAGTGTTT TGTTATGCAC TGATTTTGGG
TGATTGAATG TGTTAGCCAG CTACTAACAT GAGATGAGCG GGGCCTGGTG TTAATTTTAT CATATCAAAG CTTATATACT
GAAATAAACT TTTAGGTTTT CTACATTTTG ATAAACTACA ATTGTTTCTA ACAGGACAAG AACATTTTCA AACAAGATTT
GCTAAATTCA AAGCAATTCA AAACTAGTTT ACAACCAATT ATGAAATTAT GGTATAGAAC AACTCCTGCT AAAGCCACTT
TAGAACCCGT TTTTGTTAGA TGTTCTAGGC AGCAGATAGG AGTTAACAGT GGAATAATAA TCAGAGTATG TATACTCTAC
AGTTATTGCA TTCTACCAGG TTTCTTGACC TCCACCCTGA GTTCCCCTGC TGACAAAGAA GCCAGCAGGC ACCCCTACCA
GCTTCTGCTC TCTCCGCAAC TTACCTATTG AATCTAAAAA ACGCCTTCAT CTGTGCTGTC ATGCTTCCTT ACATTGTTGA
AAATCCAAAC AGCAAGCCAC CAGCCTCCAT CAACTTGTAT TTCGTTTGAT GTTTTTCGTT TATTGCTTTA GTCCAATTTC
AATCGTCCAG TGCTATTGTG TATTGTTCTA TTTTCGAGAA AAGCAATTAC TGAATTTGGT CTGCTGACTA TTACAAGTGA
AAAAATAAAA TAAAATAAAG TTGTCATTGT GAATGCTTAT GTGTGAGAAA GACAATGTTT G

[show][hide][copy]CDS

>Vigan.01G543900.01
ATGTTCGGCT CCGCCCGAAT CTTCTCCGAC GTCGCTCTCC GCCTCCGCCA AAACTTATCG CTTCGAGGTG TGCGCGTGCA
GAACATCAAC ATCGGAGGCG GTATGGGAGG CGAGATCCCC GACAATAAGC GTCTGGAGTA CGCTCTCCAG CACCTGCACG
GAATAGGGCG CTCGAAAGCG CACCACATCG TGTGCGAGCT CGGAGTTGAG AACAAATTCG TGAAGGATCT CAGCAAGAGG
GAACTCTATT CCATTCGCGA GTTGCTCGCC AAGTACTTGA TCGGAAACGA TTTGAAAAAG TGTGTTGAGA GAGATGTGGT
AAGGTTGGTG GGCATTCAGT GCTACCGAGG GATCAGGCAT GTGGATAACT TACCCTGCCG TGGACAAAGG ACTCATACGA
ATGCACGCAC AAGGAGGAGC CGGAAGACTT TCTCTGGATC GAGATAG

[show][hide][copy]PROTEIN

>Vigan.01G543900.01
MFGSARIFSD VALRLRQNLS LRGVRVQNIN IGGGMGGEIP DNKRLEYALQ HLHGIGRSKA HHIVCELGVE NKFVKDLSKR
ELYSIRELLA KYLIGNDLKK CVERDVVRLV GIQCYRGIRH VDNLPCRGQR THTNARTRRS RKTFSGSR*