GBrowse Details

Vigan.01G551100.01

Basic Information:
Name: Vigan.01G551100.01
Multiple alignment
Variant Information
Position: Chr01:66862532..66869037 (+ strand)
Length: 6506
Functional Information:
Description: Similar to Glucose-1-phosphate adenylyltransferase. [V7C6W6, Phaseolus vulgaris]
GO: Biological Process: glycogen biosynthetic process (GO:0005978)
Biological Process: biosynthetic process (GO:0009058)
Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878)
Molecular Function: nucleotidyltransferase activity (GO:0016779)
InterPro: Nucleotidyl transferase (IPR005835)
ADP-glucose pyrophosphorylase, conserved site (IPR005836)
Trimeric LpxA-like (IPR011004)
Glucose-1-phosphate adenylyltransferase (IPR011831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.03,8.72,256.82,0.24,1.44,0.18,10.53
Arabidopsis thaliana homolog: AT1G27680.1, AT2G21590.1, AT4G39210.1, AT5G19220.1
Automatic updates:
Name: NM_001254462 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like (LOC100810451), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: NM_001279202 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like (LOC101504730), mRNA; nuclear gene for chloroplast product.
PubMed ID: 11830133 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:66862532..66862829 (+ strand)
Length: 298
Type: five_prime_UTR
Position: Chr01:66862830..66863057 (+ strand)
Length: 228
Type: CDS
Position: Chr01:66863648..66863761 (+ strand)
Length: 114
Type: CDS
Position: Chr01:66864002..66864175 (+ strand)
Length: 174
Type: CDS
Position: Chr01:66864440..66864532 (+ strand)
Length: 93
Type: CDS
Position: Chr01:66864627..66864710 (+ strand)
Length: 84
Type: CDS
Position: Chr01:66864812..66864867 (+ strand)
Length: 56
Type: CDS
Position: Chr01:66866657..66866750 (+ strand)
Length: 94
Type: CDS
Position: Chr01:66866839..66866951 (+ strand)
Length: 113
Type: CDS
Position: Chr01:66867105..66867177 (+ strand)
Length: 73
Type: CDS
Position: Chr01:66867255..66867335 (+ strand)
Length: 81
Type: CDS
Position: Chr01:66867579..66867665 (+ strand)
Length: 87
Type: CDS
Position: Chr01:66867976..66868080 (+ strand)
Length: 105
Type: CDS
Position: Chr01:66868326..66868432 (+ strand)
Length: 107
Type: CDS
Position: Chr01:66868504..66868564 (+ strand)
Length: 61
Type: CDS
Position: Chr01:66868886..66868987 (+ strand)
Length: 102
Type: CDS
Position: Chr01:66868988..66869037 (+ strand)
Length: 50
Type: three_prime_UTR


>Vigan.01G551100.01
AGAGGTATTG CGAATGAGCA TGGAATATTC GTCGATTGGT TTGGTGATGA CAAACAAAAT GTAAGGTCTA AAGTGTCATT
GGACATGTGC ACTTATTTTG TAATAACAGT AACAAACACA AACCAAACTG GTGGATGTTG TTGAATTTGG ATAACGTGGC
CCAATCCTCC AATGCATGTA ACCAAATCTC CACACACATC AATGGTTGCT CTCTCTGCTT CTTCTCTACG ACATAAATAC
ACACACAAGA CAACCTTGAA TTACCAACTA CGTAAATTCC CATTTTCTCC CCGGAAAAAT GGCAGCCTCT GCCGGCGGCC
AGATAACGGT GTCCTCAACA GTGCAGCTGC ATGGAATGGG GTGTGGTCGG AACTGGAAGC TTGTCAAGTT TTGCAATGGG
GAACTCATGG GACGTAAGCT TCACTTCAAA ACTGCTTCTC CCACAACTGC TTGCTCTAAG AATGTCAAGC CTCAACACCA
TATATGCATG TCTCTCACAA CTGACCTATT ATCCACTGAA TCCAAGTTGA GAGACTTAGA AATGGAAAGA AGAAACGCAA
GAACAGTGTT GGCAGTTATA CTTGGTGGAG GAGCTGGAAC CCGTCTCTTC CCTCTCACTA AGCGACGAGC CAAGCCTGCT
GTTCCTATTG GAGGTGCTTA CAGGCTGATT GATGTGCCGA TGAGTAACTG CATCAACAGT GGTATAAACA AGGTGTACAT
TCTCACTCAG TTTAACTCAG CCTCACTCAA CAGGCATATT GCACGTGCTT ACAACTCTGG TAGTGGAGTC ACCTTTGGAG
ATGGCTACGT CGAGGTTCTT GCAGCAACCC AAACCCCAGG GGAGGCAGGT AAAAAGTGGT TTCAAGGTAC TGCTGATGCT
GTGCGGCAGT TCCACTGGCT CTTTGAGGAT CCAAGAAGCA AGGGCATTGA GGATGTGTTG ATTCTTTCTG GGGATCACCT
CTATCGAATG GATTATATGG ACTTCGTTAA AAATCACCGT GAGAGTGGTG CAGATATCAC TCTTTCTTGT CTGCCAATGG
ACGACAGCCG TGCCTCAGAT TTTGGTCTGA TGAAGATAGA CAACAAAGGA AGGATCCTTT CATTTAGTGA AAAGCCTAAA
GGAGAAGAGT TGAAAGCAAT GCAAGTAGAT ACAACCGTTT TGGGCCTTTC GAAGGATGAG GCTCAAAAGA AACCATACAT
TGCTTCCATG GGAGTGTACG TCTTCAAGAA GGAAATTCTT CTTAATCTAC TAAGATGGCG CTTTCCTACT GCAAACGACT
TTGGATCAGA GGTTATTCCT GCCTCAGCTA GAGAATATTA TATGAAGGCT TATCTCTTCA ATGATTATTG GGAAGACATA
GGGACCATCA GATCATTCTT TGAGGCAAAT CTTGCCCTCA CTGAGCATCC ACCCAGGTTT AGCTTTTACG ATGCAGCAAA
ACCAATGTAT ACATCCAGGA GAAACTTACC ACCATCAAAG ATTGACAATA GCAAGATTGT TGATTCAATC ATATCACATG
GAAGCTTCTT GAATAATACC TTGATAGAGC ACAGTGTTGT TGGAATCAGA TCCAGAATAA ACTCAAATGT TCATCTAAAG
GATACGGTGA TGCTTGGTGC TGATTTCTAT GAAACCGATG CAGAAGTGGC AGAACTCTTA GCTGAAGGAA GGGTTCCGAT
AGGAATAGGA GAAAATACCA AAATCAAGAA CTGTATCATT GACAAAAATG CTAGAATAGG AAAGAATGTC GTAATAGCAA
ATTCAGAGGG CATACAAGAG GCTGATAGAT CTTCAGAAGG GTTTTACATC CGTTCTGGGA TTACCATTGT ATTGAAAAAC
TCAGTAATTG AAGATGGACT CGTCATATAA TAAATTCGCC CGCGGTTTGT TTGCCCCGGT TTACAAAGAA TTTGAGGATG


>Vigan.01G551100.01
ATGGCAGCCT CTGCCGGCGG CCAGATAACG GTGTCCTCAA CAGTGCAGCT GCATGGAATG GGGTGTGGTC GGAACTGGAA
GCTTGTCAAG TTTTGCAATG GGGAACTCAT GGGACGTAAG CTTCACTTCA AAACTGCTTC TCCCACAACT GCTTGCTCTA
AGAATGTCAA GCCTCAACAC CATATATGCA TGTCTCTCAC AACTGACCTA TTATCCACTG AATCCAAGTT GAGAGACTTA
GAAATGGAAA GAAGAAACGC AAGAACAGTG TTGGCAGTTA TACTTGGTGG AGGAGCTGGA ACCCGTCTCT TCCCTCTCAC
TAAGCGACGA GCCAAGCCTG CTGTTCCTAT TGGAGGTGCT TACAGGCTGA TTGATGTGCC GATGAGTAAC TGCATCAACA
GTGGTATAAA CAAGGTGTAC ATTCTCACTC AGTTTAACTC AGCCTCACTC AACAGGCATA TTGCACGTGC TTACAACTCT
GGTAGTGGAG TCACCTTTGG AGATGGCTAC GTCGAGGTTC TTGCAGCAAC CCAAACCCCA GGGGAGGCAG GTAAAAAGTG
GTTTCAAGGT ACTGCTGATG CTGTGCGGCA GTTCCACTGG CTCTTTGAGG ATCCAAGAAG CAAGGGCATT GAGGATGTGT
TGATTCTTTC TGGGGATCAC CTCTATCGAA TGGATTATAT GGACTTCGTT AAAAATCACC GTGAGAGTGG TGCAGATATC
ACTCTTTCTT GTCTGCCAAT GGACGACAGC CGTGCCTCAG ATTTTGGTCT GATGAAGATA GACAACAAAG GAAGGATCCT
TTCATTTAGT GAAAAGCCTA AAGGAGAAGA GTTGAAAGCA ATGCAAGTAG ATACAACCGT TTTGGGCCTT TCGAAGGATG
AGGCTCAAAA GAAACCATAC ATTGCTTCCA TGGGAGTGTA CGTCTTCAAG AAGGAAATTC TTCTTAATCT ACTAAGATGG
CGCTTTCCTA CTGCAAACGA CTTTGGATCA GAGGTTATTC CTGCCTCAGC TAGAGAATAT TATATGAAGG CTTATCTCTT
CAATGATTAT TGGGAAGACA TAGGGACCAT CAGATCATTC TTTGAGGCAA ATCTTGCCCT CACTGAGCAT CCACCCAGGT
TTAGCTTTTA CGATGCAGCA AAACCAATGT ATACATCCAG GAGAAACTTA CCACCATCAA AGATTGACAA TAGCAAGATT
GTTGATTCAA TCATATCACA TGGAAGCTTC TTGAATAATA CCTTGATAGA GCACAGTGTT GTTGGAATCA GATCCAGAAT
AAACTCAAAT GTTCATCTAA AGGATACGGT GATGCTTGGT GCTGATTTCT ATGAAACCGA TGCAGAAGTG GCAGAACTCT
TAGCTGAAGG AAGGGTTCCG ATAGGAATAG GAGAAAATAC CAAAATCAAG AACTGTATCA TTGACAAAAA TGCTAGAATA
GGAAAGAATG TCGTAATAGC AAATTCAGAG GGCATACAAG AGGCTGATAG ATCTTCAGAA GGGTTTTACA TCCGTTCTGG
GATTACCATT GTATTGAAAA ACTCAGTAAT TGAAGATGGA CTCGTCATAT AA

>Vigan.01G551100.01
MAASAGGQIT VSSTVQLHGM GCGRNWKLVK FCNGELMGRK LHFKTASPTT ACSKNVKPQH HICMSLTTDL LSTESKLRDL
EMERRNARTV LAVILGGGAG TRLFPLTKRR AKPAVPIGGA YRLIDVPMSN CINSGINKVY ILTQFNSASL NRHIARAYNS
GSGVTFGDGY VEVLAATQTP GEAGKKWFQG TADAVRQFHW LFEDPRSKGI EDVLILSGDH LYRMDYMDFV KNHRESGADI
TLSCLPMDDS RASDFGLMKI DNKGRILSFS EKPKGEELKA MQVDTTVLGL SKDEAQKKPY IASMGVYVFK KEILLNLLRW
RFPTANDFGS EVIPASAREY YMKAYLFNDY WEDIGTIRSF FEANLALTEH PPRFSFYDAA KPMYTSRRNL PPSKIDNSKI
VDSIISHGSF LNNTLIEHSV VGIRSRINSN VHLKDTVMLG ADFYETDAEV AELLAEGRVP IGIGENTKIK NCIIDKNARI
GKNVVIANSE GIQEADRSSE GFYIRSGITI VLKNSVIEDG LVI*