VIGGS:GBrowse

Vigan.02G001800.01

Basic Information:

Name:	Vigan.02G001800.01 Multiple alignment Variant Information
Position:	Chr02:158908..160933 (- strand)
Length:	2026

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JSC6, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L3 (IPR000597)
	Translation protein, beta-barrel domain (IPR009000)
	Ribosomal protein L3, conserved site (IPR019926)
	Ribosomal protein L3, bacterial/organelle-type (IPR019927)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:19.34,21.57,45.41,111.38,16.79,62.49,27.38,18.93
Arabidopsis thaliana homolog:	AT2G43030.1

Automatic updates:

Name:	NM_001317607 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 50S ribosomal protein L3, chloroplastic-like (LOC100809897), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:158908..159596 (- strand)
Length:	689
Type:	three_prime_UTR

Position:	Chr02:159597..159886 (- strand)
Length:	290
Type:	CDS

Position:	Chr02:160175..160688 (- strand)
Length:	514
Type:	CDS

Position:	Chr02:160689..160933 (- strand)
Length:	245
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G001800.01
CAAAATTTAA ATCTGTACAC AATTTTAATT ACTAATGACT ACAATATTGC ATTTTGCATT TCGGACATGT TTTTGGATAA
ATATTTAACA TGGGCCGGGC TTGACTACTA AAAGGAACTG GTCTTTCCAT TCCTCAGCGG AGAGAGAGAG AGAGAAAGGA
TAAGAGTTTA AGATTAATTC CAGTGTGCTT CTCTCTAACT GTTACGAGTC TGTGACGCTC GCTGGGATAA GGAAGCAGAG
CAAGCATGTC AATGTTGTCC ATTCCGTCGC CAATATATGG TTCTTCTCAT TCCTCCCTTT CAATTTCTCG GCTGCCGTAT
TCTTTGACGG CTCAGCCTCT GCAAGTGAGT AGAAGAGCAA AAGTGAGAGG TGTGGTTGTG ATGAGTATGG AAGCAGGTAT
TGGAGTCATG GCCACCAAAT TGGGTATGAT GAGCTTCTTC CAACCCGACG GCGAGGTTGT TCCTGTCACT GTCGTTGGCT
TCAAAGAAGG GAACATCGTT ACACAGATCA AAACTGAGGC CACCGATGGC TACGACTCCG TCCAGGTTGG TTACCGAAGG
GTCCGAGACC GCAAATTGAC CAAACCCGAA ATGGGTCATC TCGAGAAGGT TGGTGCCATT CCCATGCGTC ATCTTCAGGA
GTTCCGTCTT CAAACCGTTG ATCAATTCGA GCTTAACCAA CGCCTCGTTT TCGATGAGCT CTTCAAGGAG GGTGATCTTG
TTGATGTCTC TGGCACCACC ATTGGCAAGG GTTTCCAAGG TGGAATCAAG CGTCATAACT TTAGAAGGGG TCCAATGACC
CATGGTTCGA AGAGTCATAG ACAACTGGGA TCAATTGGTG CTGGAACCAC ACCCGGTCGT GTGTACAAGG GAAAGAAGAT
GCCCGGAAGG ATGGGAGGGA CCAAGAGGAA GATAAGAAAG CTTAAGATTG TCAAAATCGA TAAAGATCTT AACGTGGTAA
TGATCAAAGG TGCTCTCCCT GGTAAGCCTG GAAATCTTCT CCGGATAACT CCAGCCAAGA TTGTGGGCAA GAACATTCCA
AAGAATTAGC ACATCTTTCC TTTTTGTTCT CACTTCATGC TGCATTTCAT TAACTTGTCT GTAATTGTTG CATTCCTCTG
TTGGCCCTTA GGTGCTACTT TATGTATACC TACTACTATT GCGTTTTCCA ATCCATTCAA TCATACTCCA CTTTACCAGT
TTGGGTTCCG TATCTTAATT GCTCAACATA AGATATTGTG AATACCGTTT CTTGTTTCCA GATGAAAACA GCATCGTGTT
TGACAACCTC CCCACAAAAG TGACATTCAT TTGCTGAACT TCACTAGATT TTTTGTAATA CTGTATGTAA TTGATGCCAT
ATGTAACGTC ACACACGCAC ACCGCTGTTA TATTCTTATC GATTATCAAA CAGGATATGG AAAGAGGAGA TTCGGGGTGA
TTAGAAGAAG GGAAATCAAA AGCTCACGGA AATATAAAAA ATAGAGAAAA TTCAGAACTT TATTGGTTTA GCCTGTCTTT
GTTTTGTTGA CTAGTTTGTC TTCACTCTAT TTTATTGATT TACTTTACCA ACATGTTTAA GATTGAGTGG AAGGAACTTG
AATTCTTAAG CATGTCTTTT TGGGTAATAT TTTAAGAAAG TATTGATAGG AAAGACTCAC TCAATACTTG CTTATATGTT
AAGGGATTGG CCTTTCACCT ATAAAATAAA TTCTCTTTTA GGAAATTTTT CCCTATGC

[show][hide][copy]CDS

>Vigan.02G001800.01
ATGTCAATGT TGTCCATTCC GTCGCCAATA TATGGTTCTT CTCATTCCTC CCTTTCAATT TCTCGGCTGC CGTATTCTTT
GACGGCTCAG CCTCTGCAAG TGAGTAGAAG AGCAAAAGTG AGAGGTGTGG TTGTGATGAG TATGGAAGCA GGTATTGGAG
TCATGGCCAC CAAATTGGGT ATGATGAGCT TCTTCCAACC CGACGGCGAG GTTGTTCCTG TCACTGTCGT TGGCTTCAAA
GAAGGGAACA TCGTTACACA GATCAAAACT GAGGCCACCG ATGGCTACGA CTCCGTCCAG GTTGGTTACC GAAGGGTCCG
AGACCGCAAA TTGACCAAAC CCGAAATGGG TCATCTCGAG AAGGTTGGTG CCATTCCCAT GCGTCATCTT CAGGAGTTCC
GTCTTCAAAC CGTTGATCAA TTCGAGCTTA ACCAACGCCT CGTTTTCGAT GAGCTCTTCA AGGAGGGTGA TCTTGTTGAT
GTCTCTGGCA CCACCATTGG CAAGGGTTTC CAAGGTGGAA TCAAGCGTCA TAACTTTAGA AGGGGTCCAA TGACCCATGG
TTCGAAGAGT CATAGACAAC TGGGATCAAT TGGTGCTGGA ACCACACCCG GTCGTGTGTA CAAGGGAAAG AAGATGCCCG
GAAGGATGGG AGGGACCAAG AGGAAGATAA GAAAGCTTAA GATTGTCAAA ATCGATAAAG ATCTTAACGT GGTAATGATC
AAAGGTGCTC TCCCTGGTAA GCCTGGAAAT CTTCTCCGGA TAACTCCAGC CAAGATTGTG GGCAAGAACA TTCCAAAGAA
TTAG

[show][hide][copy]PROTEIN

>Vigan.02G001800.01
MSMLSIPSPI YGSSHSSLSI SRLPYSLTAQ PLQVSRRAKV RGVVVMSMEA GIGVMATKLG MMSFFQPDGE VVPVTVVGFK
EGNIVTQIKT EATDGYDSVQ VGYRRVRDRK LTKPEMGHLE KVGAIPMRHL QEFRLQTVDQ FELNQRLVFD ELFKEGDLVD
VSGTTIGKGF QGGIKRHNFR RGPMTHGSKS HRQLGSIGAG TTPGRVYKGK KMPGRMGGTK RKIRKLKIVK IDKDLNVVMI
KGALPGKPGN LLRITPAKIV GKNIPKN*