GBrowse Details

Vigan.02G003000.01

Basic Information:
Name: Vigan.02G003000.01
Multiple alignment
Variant Information
Position: Chr02:248031..249585 (- strand)
Length: 1555
Functional Information:
Description: Similar to aquaporin PIP2-7. [XP_003522619.2, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.98,5.82,371.99,126.62,53.63,343.23,105.93,184.34
Arabidopsis thaliana homolog: AT2G16850.1, AT4G35100.1
Automatic updates:
Name: BT090049 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-17N21 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:248031..248143 (- strand)
Length: 113
Type: three_prime_UTR
Position: Chr02:248144..248263 (- strand)
Length: 120
Type: CDS
Position: Chr02:248344..248484 (- strand)
Length: 141
Type: CDS
Position: Chr02:248574..248869 (- strand)
Length: 296
Type: CDS
Position: Chr02:248969..249248 (- strand)
Length: 280
Type: CDS
Position: Chr02:249249..249585 (- strand)
Length: 337
Type: five_prime_UTR


>Vigan.02G003000.01
ATGACCGTTG TGGTAGGGGT TGCATCGCAT TGCATGCCAG GCTGACAGAA GAAGATGAGA TGAGGCCTAC CTCTGTGCTG
TGGCTACCCA TTTAGATGAT TAGCGCTCAC ATGCTCCTGC TCTGCACCCT GTCCCACACC CTCTTTCCAT CTTTTCCTTT
TCTTCTTCTT CTATTTATTA CAATATTACC AAATTACCCC TCTCTCTTTT CCTTATAACC CACCAACCCA ACCTTACCCT
CACTCTTCTT CTTCTTCTTT CTCTTCGTAT CTTTTCACAT AACACACTCT GCTCTTTCTT CTCTCTCTCT CTCTCTCTCT
CACACAGACC AGACACAATG TCCAAAGAAC TCACCGAAGA GGGTCAACAA AGGAAGGACT ACTACGACCC TCCTCCCGCC
CCTCTCATCG ACCTCGCCGA GATCAAGCTC TGGTCCTTCT ACAGAGCCCT CATCGCCGAG TTCATCGCCA CCCTCCTCTT
CCTCTATGTC ACCGTCGCCA CCGTCATCGG TCACAAGAAA CAGACCGGTC CTTGTGACGG CGTTGGCCTT CTCGGCATAG
CCTGGGCCTT CGGTGGCATG ATCTTCGTTC TCGTTTACTG CACCGCCGGC ATTTCCGGTG GACACATAAA CCCAGCGGTC
ACTTTTGGCC TCTTCCTGGC GCGCAAGGTC TCGTTGATCC GTGCCGTTCT CTACATTGTA GCACAGTGCC TTGGTGCTAT
CAGCGGCGTC GGGTTGGTGA AGGCCTTCAT GAAGCATCCC TACAACTCCC TCGGCGGCGG TGCCAACTCC GTCAGTTCTG
GCTACTCCAA AGGCACTGCT CTCGGTGCCG AGATTATCGG CACATTTGTG CTTGTCTACA CCGTTTTCTC TGCCACCGAC
CCCAAGAGAA GCGCGCGTGA CTCTCATGTC CCCGTGTTGG CTCCATTACC CATTGGGTTC GCCGTTTTCA TGGTTCACTT
GGCTACCATA CCCATTACCG GTACCGGGAT TAACCCGGCC AGGAGCTTCG GAGCTGCTGT CATCTACAAC AATGGCAAAG
TTTGGGATGA CCATTGGATC TTTTGGGTTG GACCGTTCGT GGGAGCGTTG GCGGCGGCGG CATACCACCA GTACATACTG
AGAGCAGCGG CTATCAAGGC GTTGGGGTCG TTCCGGAGCA ACCCCACGAA CTAGCTGTTG ACGGAGAAGA GGAGAGGGAG
AGAGATAGTG TAGAGGAAGT TTAATTCGTG TTTGCATTCA TGATTTGTTA TTCAGTTGAT GTGTGTGTAT GTGATGATGA
TGACCCA

>Vigan.02G003000.01
ATGTCCAAAG AACTCACCGA AGAGGGTCAA CAAAGGAAGG ACTACTACGA CCCTCCTCCC GCCCCTCTCA TCGACCTCGC
CGAGATCAAG CTCTGGTCCT TCTACAGAGC CCTCATCGCC GAGTTCATCG CCACCCTCCT CTTCCTCTAT GTCACCGTCG
CCACCGTCAT CGGTCACAAG AAACAGACCG GTCCTTGTGA CGGCGTTGGC CTTCTCGGCA TAGCCTGGGC CTTCGGTGGC
ATGATCTTCG TTCTCGTTTA CTGCACCGCC GGCATTTCCG GTGGACACAT AAACCCAGCG GTCACTTTTG GCCTCTTCCT
GGCGCGCAAG GTCTCGTTGA TCCGTGCCGT TCTCTACATT GTAGCACAGT GCCTTGGTGC TATCAGCGGC GTCGGGTTGG
TGAAGGCCTT CATGAAGCAT CCCTACAACT CCCTCGGCGG CGGTGCCAAC TCCGTCAGTT CTGGCTACTC CAAAGGCACT
GCTCTCGGTG CCGAGATTAT CGGCACATTT GTGCTTGTCT ACACCGTTTT CTCTGCCACC GACCCCAAGA GAAGCGCGCG
TGACTCTCAT GTCCCCGTGT TGGCTCCATT ACCCATTGGG TTCGCCGTTT TCATGGTTCA CTTGGCTACC ATACCCATTA
CCGGTACCGG GATTAACCCG GCCAGGAGCT TCGGAGCTGC TGTCATCTAC AACAATGGCA AAGTTTGGGA TGACCATTGG
ATCTTTTGGG TTGGACCGTT CGTGGGAGCG TTGGCGGCGG CGGCATACCA CCAGTACATA CTGAGAGCAG CGGCTATCAA
GGCGTTGGGG TCGTTCCGGA GCAACCCCAC GAACTAG

>Vigan.02G003000.01
MSKELTEEGQ QRKDYYDPPP APLIDLAEIK LWSFYRALIA EFIATLLFLY VTVATVIGHK KQTGPCDGVG LLGIAWAFGG
MIFVLVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYI VAQCLGAISG VGLVKAFMKH PYNSLGGGAN SVSSGYSKGT
ALGAEIIGTF VLVYTVFSAT DPKRSARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NNGKVWDDHW
IFWVGPFVGA LAAAAYHQYI LRAAAIKALG SFRSNPTN*