VIGGS:GBrowse

Vigan.02G003300.01

Basic Information:

Name:	Vigan.02G003300.01 Multiple alignment Variant Information
Position:	Chr02:262110..264379 (+ strand)
Length:	2270

Functional Information:

Description:	Similar to Urease accessory protein ureH. [T2DPS1, Phaseolus vulgaris]
GO:	Biological Process: cobalt ion transport (GO:0006824)
	Biological Process: nickel cation transport (GO:0015675)
	Biological Process: transmembrane transport (GO:0055085)
	Cellular Component: integral to membrane (GO:0016021)
	Molecular Function: cobalt ion transmembrane transporter activity (GO:0015087)
	Molecular Function: nickel cation transmembrane transporter activity (GO:0015099)
	Molecular Function: metal ion binding (GO:0046872)
InterPro:	Nickel/cobalt transporter, high-affinity (IPR011541)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.27,15.42,12.71,19.63,11.83,10.29,11.34

Automatic updates:

Name:	NM_001252924 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max urease accessory protein ureH-like (LOC100818218), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:262110..262210 (+ strand)
Length:	101
Type:	five_prime_UTR

Position:	Chr02:262211..262522 (+ strand)
Length:	312
Type:	CDS

Position:	Chr02:263181..264020 (+ strand)
Length:	840
Type:	CDS

Position:	Chr02:264021..264379 (+ strand)
Length:	359
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G003300.01
AGGAGGGTTA GGTAATAGTT GGTTTTATTT AAGTAAAGAA TCTGTTTTAT GTTCTGTTTT GTTCTGTTCT CTTTCTCTGT
TTCTGTAGAT AGAAGCCACA CATGGACAGG CTTCTATCAT CGCCTTCACC TTCTTCCTTC AATACTTTCA ACAAATCTTT
CTCATTTCTC ACTCCATTTC AATCTGCAAC TGCAAGAATC AATTTATCTC CTTTAGCACG TTCCGACTTG AAGAGGGTCA
CCTCAATTTG TTGCAAGAAT GAAAACCCTT CTCTTTTTTC ATCTTCAACT CCCTTTCTTG CATCTTCCAA ACACCCCAAT
AGTTTCCCAT CCATTTCCTC TTCTCCAGAT CGCTTCCCAC CGGAACCCCA TTCTCTCAAT CAAATCAAAA CAGTGAATTT
CCAAAAGCCA AAGGCAATAC CAGCTCGGAT TCTTATCACA CTCTCTGCTC TTGCTTTGAT CTTAATCCAA CCTGCTATTG
CACCAGCAGC TTTTGCAACC TTTCAAACTG CTGCGAAGAC TGGTGGTCCT GCTGCAGCTG CCGTGGGTGG AAAATTAATC
CAAAGTGAGC TCCTAAGTAG TGGTTGGACT GGTTTCTTAG CTGGGTGCTT GCACACACTA TCAGGGCCTG ACCACCTGGC
CGCCTTGGCT CCATTGTCAA TTGGTCGAAC CCGAATGGAG AGTGCTGCTG TTGGAGCCCT TTGGGGTTGT GGTCATGATG
CTGGTCAGGT TCTTTTTGGG TTAATATTTT TAATCCTGAA GGATCAACTC CATATTGAAA TTATCCGAAC ATGGGGCACT
AGAGTGGTGG GTCTAACCCT GCTAATAATT GGTGCCATGG GAATTAGAGA AGCTTCAGAA GTACATACCC CGCGTGTTGC
TTTAGAAAGT GGTGAATGTG ATGTGAACGT GTATGAATCA GTCGATAATC CAACAGTAGG GAAAAAGAAG ATTGGATTTG
CTACTTTTGC CACTGGAATA GTTCATGGAC TGCAACCGGA TGCATTGATG ATGGTGTTGC CTGCCCTTGC TCTGCCCTCT
CGTTTAGCAG GTGCTGCGTT TCTCATCATG TTCTTAATTG GAACTGTGAT TGCCATGGGA AGCTATACTG TGTTTATAGG
TTCGTGTAGC CAGGCACTGA AAGATAGAGT ACCTAGGATA ACCGAGAAAC TCACTTGGGC TTCTTCCCTT ATTGCAATAG
CCCTTGGATT GGCTATCATT GTTAGCCAGT TTTTTGGGTT TAGTTTGTAT TAAGTTATCT TTAATCAGCT TGATCTTTTT
TCCCCACGAA TGGTATTTAG AAAAGGTAAA TTCTTTAGAC AGAAAATTGG TTGTCAAGAG GAATTACATC ATCGAGACAA
CTTGTGTAAT TGGTTGTTAA ATATCTTCTT TGCATTTGAA TGTGTATAAG TATATGTAAG TTCAATGATT CTGTTGCTGA
GAACTTTTGT CTGTATTTGT CGAATTCATC TTATCACTAC TGTTGAGTTA TATATGTATG GTGATGAGGC CTTGGAGTTC
ACTGCAGAAT GTCATTCCTA CGTTTGTGTT TACAACAAAA TCTATAATGG AGAAAAATAC AAACACTCTT TCTTTAATGA
TTAGTCAGAA CA

[show][hide][copy]CDS

>Vigan.02G003300.01
ATGGACAGGC TTCTATCATC GCCTTCACCT TCTTCCTTCA ATACTTTCAA CAAATCTTTC TCATTTCTCA CTCCATTTCA
ATCTGCAACT GCAAGAATCA ATTTATCTCC TTTAGCACGT TCCGACTTGA AGAGGGTCAC CTCAATTTGT TGCAAGAATG
AAAACCCTTC TCTTTTTTCA TCTTCAACTC CCTTTCTTGC ATCTTCCAAA CACCCCAATA GTTTCCCATC CATTTCCTCT
TCTCCAGATC GCTTCCCACC GGAACCCCAT TCTCTCAATC AAATCAAAAC AGTGAATTTC CAAAAGCCAA AGGCAATACC
AGCTCGGATT CTTATCACAC TCTCTGCTCT TGCTTTGATC TTAATCCAAC CTGCTATTGC ACCAGCAGCT TTTGCAACCT
TTCAAACTGC TGCGAAGACT GGTGGTCCTG CTGCAGCTGC CGTGGGTGGA AAATTAATCC AAAGTGAGCT CCTAAGTAGT
GGTTGGACTG GTTTCTTAGC TGGGTGCTTG CACACACTAT CAGGGCCTGA CCACCTGGCC GCCTTGGCTC CATTGTCAAT
TGGTCGAACC CGAATGGAGA GTGCTGCTGT TGGAGCCCTT TGGGGTTGTG GTCATGATGC TGGTCAGGTT CTTTTTGGGT
TAATATTTTT AATCCTGAAG GATCAACTCC ATATTGAAAT TATCCGAACA TGGGGCACTA GAGTGGTGGG TCTAACCCTG
CTAATAATTG GTGCCATGGG AATTAGAGAA GCTTCAGAAG TACATACCCC GCGTGTTGCT TTAGAAAGTG GTGAATGTGA
TGTGAACGTG TATGAATCAG TCGATAATCC AACAGTAGGG AAAAAGAAGA TTGGATTTGC TACTTTTGCC ACTGGAATAG
TTCATGGACT GCAACCGGAT GCATTGATGA TGGTGTTGCC TGCCCTTGCT CTGCCCTCTC GTTTAGCAGG TGCTGCGTTT
CTCATCATGT TCTTAATTGG AACTGTGATT GCCATGGGAA GCTATACTGT GTTTATAGGT TCGTGTAGCC AGGCACTGAA
AGATAGAGTA CCTAGGATAA CCGAGAAACT CACTTGGGCT TCTTCCCTTA TTGCAATAGC CCTTGGATTG GCTATCATTG
TTAGCCAGTT TTTTGGGTTT AGTTTGTATT AA

[show][hide][copy]PROTEIN

>Vigan.02G003300.01
MDRLLSSPSP SSFNTFNKSF SFLTPFQSAT ARINLSPLAR SDLKRVTSIC CKNENPSLFS SSTPFLASSK HPNSFPSISS
SPDRFPPEPH SLNQIKTVNF QKPKAIPARI LITLSALALI LIQPAIAPAA FATFQTAAKT GGPAAAAVGG KLIQSELLSS
GWTGFLAGCL HTLSGPDHLA ALAPLSIGRT RMESAAVGAL WGCGHDAGQV LFGLIFLILK DQLHIEIIRT WGTRVVGLTL
LIIGAMGIRE ASEVHTPRVA LESGECDVNV YESVDNPTVG KKKIGFATFA TGIVHGLQPD ALMMVLPALA LPSRLAGAAF
LIMFLIGTVI AMGSYTVFIG SCSQALKDRV PRITEKLTWA SSLIAIALGL AIIVSQFFGF SLY*