VIGGS:GBrowse

Vigan.02G006300.01

Basic Information:

Name:	Vigan.02G006300.01 Multiple alignment Variant Information
Position:	Chr02:457217..460684 (- strand)
Length:	3468

Functional Information:

Description:	Similar to Uncharacterized protein. [I1K774, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,3.17,0.62,0.89,7.41,0.56,4.85
Arabidopsis thaliana homolog:	AT1G01540.2, AT4G34500.1

Automatic updates:

Name:	NM_001248486 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein kinase family protein (LOC100305439), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:457217..457409 (- strand)
Length:	193
Type:	three_prime_UTR

Position:	Chr02:457410..457523 (- strand)
Length:	114
Type:	CDS

Position:	Chr02:457698..457907 (- strand)
Length:	210
Type:	CDS

Position:	Chr02:457995..458124 (- strand)
Length:	130
Type:	CDS

Position:	Chr02:458211..458381 (- strand)
Length:	171
Type:	CDS

Position:	Chr02:458609..458731 (- strand)
Length:	123
Type:	CDS

Position:	Chr02:458830..458934 (- strand)
Length:	105
Type:	CDS

Position:	Chr02:459956..460437 (- strand)
Length:	482
Type:	CDS

Position:	Chr02:460438..460684 (- strand)
Length:	247
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G006300.01
CCCGGTTCTG TCTTGCTTTG CTTTAGCTTT TGTATCCGTT GATGAAAGTT GAAACTTCAC ACTTTTCCCA ATATTCTCGC
TTCTTTTCTT TTTCTTCTTT TCTTCTTTCG TTCATATCAT TTTTTTCAAT TCTGAAGCAA CCACTTCACT GCATCACAGT
TTCCACAGCA GCAACAACCA AACGCTGACA ACACTACATT CTCTCGTTTT CACTCCATTC CATTCTCGCT CCAAATAAAT
ACCAGCAATG GCGGCATCCG CCACCGCCTC CGGCGGTGCG TTGACGGATC TAACTCACCG AACCCCCTTT CTCGGTCTCA
AACTCTACGC CCTGATCCTC ATTCTAGTTA TAATGGTGGT GGCAGCAGTG CTCCTGATCC TCCTCTGCTT CCGCCGGAGC
TCGAAGAAGC GGAAAATGCG AGTGAAGCAC AGCTCCGGCG CGATCCCGCT GGTATCGAAG GAGATCCTGG AGGTGAATAC
TCTGGAGCTG AAAATCGAAG AGGTGGACGA GGAGGATCCG AAGAAGGAGG AGATGAAGCT TGAAGATAGT CCGTCGGTGG
AGTCACCGAA CATAGGGTGG GGACGCTGGT ATACCCTCAG TGAGCTTGAG GCTGCGACGC AAGGGTTCGC CGAAGGGAAT
GTGATCGGAG AAGGAGGGTA TGGGATTGTG TATAGAGGAA ATTTGCTCGA CGGTTCTGTC GTCGCGGTCA AAAATCTTCT
CAACAACAAG GGGCAGGCAG AGAAAGAGTT TAAGGTGGAG GTTGAAGCCA TTGGAAAAGT GAGGCACAAG AATTTGGTGG
GGTTAGTTGG ATATTGTGCA GAAGGTGCTC AAAGGATGCT TGTTTATGAA TATGTTGACA ATGGAACATT GGAACAGTGG
CTGCATGGTG ACGTAGGACC TGTTAGCCCC TTGACATGGG ATATACGAAT GAAGATTGCT GTTGGGACTG CGAAAGGGCT
AGCCTACTTG CACGAAGGAT TAGAACCCAA AGTTGTCCAT CGAGATGTAA AATCCAGTAA CATTCTTTTG GACAAAAAGT
GGAATGCTAA AGTATCAGAC TTTGGACTGG CCAAGCTCTT AGGGCCTGAG AAAAGCTACG TGACAACGCG TGTAATGGGG
ACATTTGGAT ATGTGTCACC TGAGTATGCA AGCACAGGTA TGCTTAATGA AGGCAGCGAT GTGTATAGTT TTGGGATTCT
ACTTATGGAG CTAATTACAG GGAGGAGTCC GATCGATTAT TCTAGACCAC CTGGAGAGAT GAACTTGGTT GATTGGTTTA
AAGGAATGGT TGCAAATCGT CTTGGTGATG AACTAGTTGA TCCTTTAATA GATATTCAAC CCTCTCAAAG ATCTTTGAAA
CGAGCTTTAC TTGTTTGTCT GCGCTGTATA GATTTGGATG TCAGTAAGCG ACCAAAGATG GGCCAAATTG TTCACATGCT
TGAGGCTGAC GATTTTCCCT TTCGTTCTGA ACATCGAACA AATAGAGAGA AAGATCCTGT TTATTCTAAA GCAGCTGGTT
CCAGCAAGAT TCCATGTCCA ACAAGGCATG TAGAGCCAGT AGATAAATCA AGCTGGAGAT GATATGACAA ATCGTTAAAT
AAAAATATTT TTTCCAGCGA TTTTCAATTT GTTGTGATCA AGTCAGAAGC CATTGTGCAT ATAGTGTAGT TTCATATCTG
TAGGAGAGGT CTTAGCATAT TCTGCTGTAT GGCATTATCT TGTGAAGAAA CGAGCCTTGT AAATAATATT ATCCGTCTGC
ATAATATTTC GGCAA

[show][hide][copy]CDS

>Vigan.02G006300.01
ATGGCGGCAT CCGCCACCGC CTCCGGCGGT GCGTTGACGG ATCTAACTCA CCGAACCCCC TTTCTCGGTC TCAAACTCTA
CGCCCTGATC CTCATTCTAG TTATAATGGT GGTGGCAGCA GTGCTCCTGA TCCTCCTCTG CTTCCGCCGG AGCTCGAAGA
AGCGGAAAAT GCGAGTGAAG CACAGCTCCG GCGCGATCCC GCTGGTATCG AAGGAGATCC TGGAGGTGAA TACTCTGGAG
CTGAAAATCG AAGAGGTGGA CGAGGAGGAT CCGAAGAAGG AGGAGATGAA GCTTGAAGAT AGTCCGTCGG TGGAGTCACC
GAACATAGGG TGGGGACGCT GGTATACCCT CAGTGAGCTT GAGGCTGCGA CGCAAGGGTT CGCCGAAGGG AATGTGATCG
GAGAAGGAGG GTATGGGATT GTGTATAGAG GAAATTTGCT CGACGGTTCT GTCGTCGCGG TCAAAAATCT TCTCAACAAC
AAGGGGCAGG CAGAGAAAGA GTTTAAGGTG GAGGTTGAAG CCATTGGAAA AGTGAGGCAC AAGAATTTGG TGGGGTTAGT
TGGATATTGT GCAGAAGGTG CTCAAAGGAT GCTTGTTTAT GAATATGTTG ACAATGGAAC ATTGGAACAG TGGCTGCATG
GTGACGTAGG ACCTGTTAGC CCCTTGACAT GGGATATACG AATGAAGATT GCTGTTGGGA CTGCGAAAGG GCTAGCCTAC
TTGCACGAAG GATTAGAACC CAAAGTTGTC CATCGAGATG TAAAATCCAG TAACATTCTT TTGGACAAAA AGTGGAATGC
TAAAGTATCA GACTTTGGAC TGGCCAAGCT CTTAGGGCCT GAGAAAAGCT ACGTGACAAC GCGTGTAATG GGGACATTTG
GATATGTGTC ACCTGAGTAT GCAAGCACAG GTATGCTTAA TGAAGGCAGC GATGTGTATA GTTTTGGGAT TCTACTTATG
GAGCTAATTA CAGGGAGGAG TCCGATCGAT TATTCTAGAC CACCTGGAGA GATGAACTTG GTTGATTGGT TTAAAGGAAT
GGTTGCAAAT CGTCTTGGTG ATGAACTAGT TGATCCTTTA ATAGATATTC AACCCTCTCA AAGATCTTTG AAACGAGCTT
TACTTGTTTG TCTGCGCTGT ATAGATTTGG ATGTCAGTAA GCGACCAAAG ATGGGCCAAA TTGTTCACAT GCTTGAGGCT
GACGATTTTC CCTTTCGTTC TGAACATCGA ACAAATAGAG AGAAAGATCC TGTTTATTCT AAAGCAGCTG GTTCCAGCAA
GATTCCATGT CCAACAAGGC ATGTAGAGCC AGTAGATAAA TCAAGCTGGA GATGA

[show][hide][copy]PROTEIN

>Vigan.02G006300.01
MAASATASGG ALTDLTHRTP FLGLKLYALI LILVIMVVAA VLLILLCFRR SSKKRKMRVK HSSGAIPLVS KEILEVNTLE
LKIEEVDEED PKKEEMKLED SPSVESPNIG WGRWYTLSEL EAATQGFAEG NVIGEGGYGI VYRGNLLDGS VVAVKNLLNN
KGQAEKEFKV EVEAIGKVRH KNLVGLVGYC AEGAQRMLVY EYVDNGTLEQ WLHGDVGPVS PLTWDIRMKI AVGTAKGLAY
LHEGLEPKVV HRDVKSSNIL LDKKWNAKVS DFGLAKLLGP EKSYVTTRVM GTFGYVSPEY ASTGMLNEGS DVYSFGILLM
ELITGRSPID YSRPPGEMNL VDWFKGMVAN RLGDELVDPL IDIQPSQRSL KRALLVCLRC IDLDVSKRPK MGQIVHMLEA
DDFPFRSEHR TNREKDPVYS KAAGSSKIPC PTRHVEPVDK SSWR*