VIGGS:GBrowse

Vigan.02G010000.01

Basic Information:

Name:	Vigan.02G010000.01 Multiple alignment Variant Information
Position:	Chr02:696541..702112 (+ strand)
Length:	5572

Functional Information:

Description:	Similar to Uncharacterized protein. [I1K738, Glycine max]
GO:	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: protein binding (GO:0005515)
	Molecular Function: zinc ion binding (GO:0008270)
InterPro:	Bromo adjacent homology (BAH) domain (IPR001025)
	Zinc finger, PHD-type (IPR001965)
	Zinc finger, FYVE/PHD-type (IPR011011)
	Zinc finger, RING/FYVE/PHD-type (IPR013083)
	Zinc finger, PHD-type, conserved site (IPR019786)
	Zinc finger, PHD-finger (IPR019787)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:93.85,80.81,28.43,39.60,42.81,49.25,36.88,34.84
Arabidopsis thaliana homolog:	AT4G39100.1

Automatic updates:

Name:	NM_001249165 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100526926 (LOC100526926), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:696541..696711 (+ strand)
Length:	171
Type:	five_prime_UTR

Position:	Chr02:696712..696784 (+ strand)
Length:	73
Type:	CDS

Position:	Chr02:696918..697263 (+ strand)
Length:	346
Type:	CDS

Position:	Chr02:697642..697710 (+ strand)
Length:	69
Type:	CDS

Position:	Chr02:700972..701107 (+ strand)
Length:	136
Type:	CDS

Position:	Chr02:701737..701766 (+ strand)
Length:	30
Type:	CDS

Position:	Chr02:701767..702112 (+ strand)
Length:	346
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G010000.01
GTGTACTCGC ATTTCAATGA AGGCTGAGAT AAAAGTCGCC CCACCATTAA CCATGGTTCA GCGCAGCACT GAAACAAAAA
ATTAATAAAC CCTTACATGT AAAAAAACAT AATATTTTTC TGTATTTTAT TCATCCTCAA TCTTCTACAT CCTGTGCTTC
CATTCCATCT CATGGCTAAG CCGAAGGCTC CAAGACGAAC CCTAGAGTCA TACTCAGTCA AACACATAAG CAAAACCATT
AGAGCTGCTG ATTGCGTGCT CATGCGACCG TCGGATCCGG CTAAACCCTC ATATGTGGCC AGGATCGAAA GGATCGAGGC
GGATGCGCGT GGCGCAAATG TGAAAATTCA TGTTCGCTGG TACTACAGGC CAGAGGAGTC AATTGGGGGT CGCCGTCAGT
TTCATGGCTC AAAGGAGGTT TTTCTCTCTG ATCACTTTGA TGTTCAGAGC ACCGACACAA TCGAAGGCAA GTGTACCGTC
CACAGCTTCA AGAGCTACAC AAAACTGGAT GCGGTTGGTA ACGATGATTT CTTCTGTCGG TTTGAGTACA ATTCCTCCAC
AGGTGCCTTC AATCCTGATA GAGTTGCAGT GTATTGTAAA TGTGAGATGC CTTACAATCC TGATGACCTA ATGGTCCAAT
GTGAGGGCTG CAGTGACTGG TTCCATCCTG CTTGCATAGA CATGACTGTT GAAGAAGCCA AAAGACTTGA CCACTTCTTT
TGTGAAAGCT GCTCTGCCGA AGGTCAAAAA AAGTTGCAGA ACTCTCATTC CGCTTCTAGA CTCTCGGATA CAAAGGTGGA
CACTAAACGC CGTCGTAGGC AATAGTGTGA TAGTATATAA AGCATGATAA AATGAGTTAG ATATGTAATG AATGTACTGG
AGAACTTGGA TTCCTAATCC TGGGTAGGGG CCGGACAAAG ACGGAGACAA AGTTATGTTG TTCTATGTTG TAGTCGTTCA
CTTTCGCATG GAAAGAGACT AGTTTGGAAA CTTGTCATGT GTATTTGGTT GGAGGACAAA TGCAGTTTCC TTTGAAGTGG
AGGACGTGTT TATGTAATTA TATAGTGTAG ATTCTGTCTC TTCTTTCTGG TCCTTGTTCT GAGTCGGATG AACTTTTGTA
AAGTATTTTA CTTATTTATG AGAGCAGTAG ACACTCAATT CTTTCTTTGT A

[show][hide][copy]CDS

>Vigan.02G010000.01
ATGGCTAAGC CGAAGGCTCC AAGACGAACC CTAGAGTCAT ACTCAGTCAA ACACATAAGC AAAACCATTA GAGCTGCTGA
TTGCGTGCTC ATGCGACCGT CGGATCCGGC TAAACCCTCA TATGTGGCCA GGATCGAAAG GATCGAGGCG GATGCGCGTG
GCGCAAATGT GAAAATTCAT GTTCGCTGGT ACTACAGGCC AGAGGAGTCA ATTGGGGGTC GCCGTCAGTT TCATGGCTCA
AAGGAGGTTT TTCTCTCTGA TCACTTTGAT GTTCAGAGCA CCGACACAAT CGAAGGCAAG TGTACCGTCC ACAGCTTCAA
GAGCTACACA AAACTGGATG CGGTTGGTAA CGATGATTTC TTCTGTCGGT TTGAGTACAA TTCCTCCACA GGTGCCTTCA
ATCCTGATAG AGTTGCAGTG TATTGTAAAT GTGAGATGCC TTACAATCCT GATGACCTAA TGGTCCAATG TGAGGGCTGC
AGTGACTGGT TCCATCCTGC TTGCATAGAC ATGACTGTTG AAGAAGCCAA AAGACTTGAC CACTTCTTTT GTGAAAGCTG
CTCTGCCGAA GGTCAAAAAA AGTTGCAGAA CTCTCATTCC GCTTCTAGAC TCTCGGATAC AAAGGTGGAC ACTAAACGCC
GTCGTAGGCA ATAG

[show][hide][copy]PROTEIN

>Vigan.02G010000.01
MAKPKAPRRT LESYSVKHIS KTIRAADCVL MRPSDPAKPS YVARIERIEA DARGANVKIH VRWYYRPEES IGGRRQFHGS
KEVFLSDHFD VQSTDTIEGK CTVHSFKSYT KLDAVGNDDF FCRFEYNSST GAFNPDRVAV YCKCEMPYNP DDLMVQCEGC
SDWFHPACID MTVEEAKRLD HFFCESCSAE GQKKLQNSHS ASRLSDTKVD TKRRRRQ*