GBrowse Details

Vigan.02G010700.01

Basic Information:
Name: Vigan.02G010700.01
Multiple alignment
Variant Information
Position: Chr02:753881..759330 (- strand)
Length: 5450
Functional Information:
Description: Similar to Neutrophil cytosol factor. [G7J7R7, Medicago truncatula]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Src homology-3 domain (IPR001452)
Arfaptin homology (AH) domain/BAR domain (IPR027267)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.39,19.08,13.15,13.21,16.62,19.14,18.91,16.65
Arabidopsis thaliana homolog: AT4G34660.1
Automatic updates:
Name: NM_001255584 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max BAR and SH3 domain-containing protein (LOC100783004), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:753881..754093 (- strand)
Length: 213
Type: three_prime_UTR
Position: Chr02:754094..754210 (- strand)
Length: 117
Type: CDS
Position: Chr02:754835..754909 (- strand)
Length: 75
Type: CDS
Position: Chr02:754997..755149 (- strand)
Length: 153
Type: CDS
Position: Chr02:755282..755344 (- strand)
Length: 63
Type: CDS
Position: Chr02:755458..755658 (- strand)
Length: 201
Type: CDS
Position: Chr02:755805..755906 (- strand)
Length: 102
Type: CDS
Position: Chr02:756877..757028 (- strand)
Length: 152
Type: CDS
Position: Chr02:757480..757549 (- strand)
Length: 70
Type: CDS
Position: Chr02:757651..757773 (- strand)
Length: 123
Type: CDS
Position: Chr02:759064..759123 (- strand)
Length: 60
Type: CDS
Position: Chr02:759124..759330 (- strand)
Length: 207
Type: five_prime_UTR


>Vigan.02G010700.01
TAAAAAGCCA ACTAAGGTGC CCAGGGAAGG AACAAACAAA GCCCCTGTCT ATGACATATA GAATGAAATT TCTTTCAACG
TGATTTGAAA AACCTCTGTC TGTCTCTTCC TTTTCTCTGT GATATTCAAA CATCTTTCCT ACTGTTTCGG CTGAAAACGC
ATCAGCAGTG TGCGCGGCGG TGGAAGGTGG ATCAAAAAGG ATTCTGAATG GAAGCTATCA GAAAGCAAGC CTCCAAACTT
CGAGAACAGG TTGCTCGCCA ACAACAGGCT GTGCTTAAAC AGTTTGGGGC TGGGGGATAT GGAGGCTCAG ATAATATGGT
TACTGATGAG GTGGAACTTC AACAACATCA GAAACTTGAG AAGCTTTACA TATCAACACG GGCTGGAAAG CATTATCAAA
GGGATATTGT CCGTGGTGTG GAAGGTTATA TTGTAACTGG ATCCAAGCAA GTTGAAATAG GAACAAAGTT ATCAGAAGAT
AGCAGGAAAT ATGGTGCAGA TAATACATGT ACCAGTGGTA GTACGTTATC AAGAGCAGCG CTAAACTATG CACGTGCCCG
TGCACAAATG GAGAAGGAGC GTGGAAGCTT ACTAAAAGCA CTTGGAACAC AGGTTGCGGA GCCCTTAAGA GCGATGGTGA
TGGGAGCACC ATTGGAAGAT GCCCGACATC TTGCTCAACG ATATGATAGA ATGCGGCAGG AAGCTGAAGC CCAGGCTATT
GAAGTTTCCA AACGCCAGGC AAGAGTAAGA GAAACACCAG GCAATACTGA GAATGCTATG AAACTGGAAG CAGCTGAAGT
AAAGCTCCAA GACCTAAAGA CAAACATGGC CATATTGGGA AAAGAAGCAG CTGCTGCAAT GGCTGCTGTT GAAGCGCAGC
AACAGAGGTT AACCCTCCAG CGTCTTATAG CTATGGTTGA AGCAGAGCGA GCATATCATC AAAGAGTACT CCAAATACTG
GATCAGCTAG AGGGAGAGAT GATATCAGAA CGACAGCGGA TTGAAGCCCC TCCTACACCA AGTGTGGATA ACAGCATGCC
ACCACCTCCA TCATACGAAG AAGTAAATGG TGTATATGCT TCTCAAACAC ATAATGGCTC AACAGATAGT ATGGGTTACT
TCTTAGGAGA GGTTTTGTTT CCCTACCATG CGGAGTCAGA AGTTGAATTG AATCTATCAG TTGGGGATTA CATTGTTGTT
AGAAAGGTGA CCAACAATGG ATGGGCTGAG GGCGAATGCA AAGGGAAAGC AGGTTGGTTT CCATTTGGTT ACGTTGAAAG
AAGGGAGCGA GTCCTTGCAA GTAAGGTAGC TGAAGTGTTT TGATTATTTT TCTGCTGATC AGGGTTGAGT TGGTGGTTTC
TTCCCCAAGG GTTTTGTATG TGTGTAGGTT TTGGTTTGTG CTTCATGGAT ACCAATCCAT TTGTGATATA TAGATGATGA
CAACTTCTTT CTTCTGATTA TCATTTGTAG CTTTGATTTC ATTTAAGTAT TAAAATATTT ATACTCTTTC CCGTTTTTAA
GAAAAAAAAA TCGTAG

>Vigan.02G010700.01
ATGGAAGCTA TCAGAAAGCA AGCCTCCAAA CTTCGAGAAC AGGTTGCTCG CCAACAACAG GCTGTGCTTA AACAGTTTGG
GGCTGGGGGA TATGGAGGCT CAGATAATAT GGTTACTGAT GAGGTGGAAC TTCAACAACA TCAGAAACTT GAGAAGCTTT
ACATATCAAC ACGGGCTGGA AAGCATTATC AAAGGGATAT TGTCCGTGGT GTGGAAGGTT ATATTGTAAC TGGATCCAAG
CAAGTTGAAA TAGGAACAAA GTTATCAGAA GATAGCAGGA AATATGGTGC AGATAATACA TGTACCAGTG GTAGTACGTT
ATCAAGAGCA GCGCTAAACT ATGCACGTGC CCGTGCACAA ATGGAGAAGG AGCGTGGAAG CTTACTAAAA GCACTTGGAA
CACAGGTTGC GGAGCCCTTA AGAGCGATGG TGATGGGAGC ACCATTGGAA GATGCCCGAC ATCTTGCTCA ACGATATGAT
AGAATGCGGC AGGAAGCTGA AGCCCAGGCT ATTGAAGTTT CCAAACGCCA GGCAAGAGTA AGAGAAACAC CAGGCAATAC
TGAGAATGCT ATGAAACTGG AAGCAGCTGA AGTAAAGCTC CAAGACCTAA AGACAAACAT GGCCATATTG GGAAAAGAAG
CAGCTGCTGC AATGGCTGCT GTTGAAGCGC AGCAACAGAG GTTAACCCTC CAGCGTCTTA TAGCTATGGT TGAAGCAGAG
CGAGCATATC ATCAAAGAGT ACTCCAAATA CTGGATCAGC TAGAGGGAGA GATGATATCA GAACGACAGC GGATTGAAGC
CCCTCCTACA CCAAGTGTGG ATAACAGCAT GCCACCACCT CCATCATACG AAGAAGTAAA TGGTGTATAT GCTTCTCAAA
CACATAATGG CTCAACAGAT AGTATGGGTT ACTTCTTAGG AGAGGTTTTG TTTCCCTACC ATGCGGAGTC AGAAGTTGAA
TTGAATCTAT CAGTTGGGGA TTACATTGTT GTTAGAAAGG TGACCAACAA TGGATGGGCT GAGGGCGAAT GCAAAGGGAA
AGCAGGTTGG TTTCCATTTG GTTACGTTGA AAGAAGGGAG CGAGTCCTTG CAAGTAAGGT AGCTGAAGTG TTTTGA

>Vigan.02G010700.01
MEAIRKQASK LREQVARQQQ AVLKQFGAGG YGGSDNMVTD EVELQQHQKL EKLYISTRAG KHYQRDIVRG VEGYIVTGSK
QVEIGTKLSE DSRKYGADNT CTSGSTLSRA ALNYARARAQ MEKERGSLLK ALGTQVAEPL RAMVMGAPLE DARHLAQRYD
RMRQEAEAQA IEVSKRQARV RETPGNTENA MKLEAAEVKL QDLKTNMAIL GKEAAAAMAA VEAQQQRLTL QRLIAMVEAE
RAYHQRVLQI LDQLEGEMIS ERQRIEAPPT PSVDNSMPPP PSYEEVNGVY ASQTHNGSTD SMGYFLGEVL FPYHAESEVE
LNLSVGDYIV VRKVTNNGWA EGECKGKAGW FPFGYVERRE RVLASKVAEV F*