GBrowse Details

Vigan.02G017700.01

Basic Information:
Name: Vigan.02G017700.01
Multiple alignment
Variant Information
Position: Chr02:1225404..1227135 (- strand)
Length: 1732
Functional Information:
Description: Similar to xylem cysteine proteinase 2. [XP_003522989.1, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: cysteine-type peptidase activity (GO:0008234)
InterPro: Cysteine peptidase, cysteine active site (IPR000169)
Peptidase C1A, papain C-terminal (IPR000668)
Peptidase C1A, papain (IPR013128)
Proteinase inhibitor I29, cathepsin propeptide (IPR013201)
Cysteine peptidase, histidine active site (IPR025660)
Cysteine peptidase, asparagine active site (IPR025661)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,1.81,7.94,5.27,1.57,2.14,20.18,36.77
Arabidopsis thaliana homolog: AT1G20850.1, AT4G35350.1
Automatic updates:
Name: BT093791 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-17D16 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:1225404..1225554 (- strand)
Length: 151
Type: three_prime_UTR
Position: Chr02:1225555..1225770 (- strand)
Length: 216
Type: CDS
Position: Chr02:1225880..1226020 (- strand)
Length: 141
Type: CDS
Position: Chr02:1226103..1226338 (- strand)
Length: 236
Type: CDS
Position: Chr02:1226536..1226992 (- strand)
Length: 457
Type: CDS
Position: Chr02:1226993..1227135 (- strand)
Length: 143
Type: five_prime_UTR


>Vigan.02G017700.01
CCACGTCAAA AGAACATGCA TGCTTGAAGC ATACTACTCA TAACAATTCC AAAATCTAAA GCACAAAACC TATATATATA
TAAGGCTCTC TTTCCTATTC TTCTTCATCC CTTACCTATT CACATTATTC AACAACCATA GCCATGGCTT TCTCCTCCTC
TAAGTTACTT CTCCTTGCCT GTTCCTTCTG CCTGTTCTCA TCTTTGGCTT TTGGACGCGA TTTCTCCATT GTGGGGTACT
CATCGGAGGA CTTAAACTCC ATGGATAAGC TCATTGAACT CTTTGAATCG TGGATGTCTA GGTACGGCAA GATTTACGAG
AGCATTGAGG AGAAGCTGCT GAGGTTCGAC ATTTTCAAAG ACAACTTAAA GCACATAGAT GAGAGAAACA ACGTGATCAG
CAACTACTGG CTTGGGTTGA ACGAGTTTGC TGATTTGAGC CACCAAGAGT TCAAGAACAA ATATCTAGGG CTTAAGGTTG
ACTACTCTAG AAGGAGAGAA TCCCAAGAAG AATTCACTTA CAAGGATGTT GAATTGCCAA AATCAGTTGA TTGGAGAAAG
AAGGGTGCTG TAACGCAAGT CAAGAACCAA GGTTCATGTG GTAGCTGCTG GGCATTTTCC ACTGTTGCAG CGGTTGAAGG
AATAAACCAA CTTGTGACGG GAAATTTGAC ATCTTTGTCT GAGCAAGAAT TGATTGACTG TGACAGAACT TACAACAGTG
GTTGCAATGG GGGGCTCATG GATTATGCAT TCTCTTTTAT AGTAGAAAAC GGTGGACTCC ATAAAGAGGA AGACTATCCT
TACATTATGG AGGAGGGTAC TTGCGAGATG ACAAAGGAAG AAACTGAAGT TGTCACAATT AGCGGGTACC ATGACGTCCC
ACAAAACAAT GAACAGAGCC TATTGAAGGC TCTTGCGAAC CAACCCCTCA GTGTGGCCAT AGAGGCTTCA AGCAGAGATT
TCCAATTTTA CAGTGGGGGT GTTTTTGATG GACATTGCGG AAGTGACTTA GATCACGGAG TGGCAGCTGT TGGATACGGA
ACTTCAAAAG GAGTGGATTA TATCATCGTG AAAAATTCAT GGGGATCTAA GTGGGGAGAA AAAGGGTACA TAAGAATGAA
GAGAAACATC GGAAAACCTG AAGGAATCTG CGGAATCTAT AAGATGGCTT CTTATCCTAC CAAGAAGAAA TAAGATAAAA
GAACATTTCC TTAATAGCTT ACTCCACTCG TGTCTCAATT TGTTTCCATC TACTAATCCA TTCTCAGTGT CTGCTTATTT
CAGCTTGTCC ATAGAAACAA TCAAACAGTG TAACGATTTC TATGTGATAA TAAAATGATT TAAT

>Vigan.02G017700.01
ATGGCTTTCT CCTCCTCTAA GTTACTTCTC CTTGCCTGTT CCTTCTGCCT GTTCTCATCT TTGGCTTTTG GACGCGATTT
CTCCATTGTG GGGTACTCAT CGGAGGACTT AAACTCCATG GATAAGCTCA TTGAACTCTT TGAATCGTGG ATGTCTAGGT
ACGGCAAGAT TTACGAGAGC ATTGAGGAGA AGCTGCTGAG GTTCGACATT TTCAAAGACA ACTTAAAGCA CATAGATGAG
AGAAACAACG TGATCAGCAA CTACTGGCTT GGGTTGAACG AGTTTGCTGA TTTGAGCCAC CAAGAGTTCA AGAACAAATA
TCTAGGGCTT AAGGTTGACT ACTCTAGAAG GAGAGAATCC CAAGAAGAAT TCACTTACAA GGATGTTGAA TTGCCAAAAT
CAGTTGATTG GAGAAAGAAG GGTGCTGTAA CGCAAGTCAA GAACCAAGGT TCATGTGGTA GCTGCTGGGC ATTTTCCACT
GTTGCAGCGG TTGAAGGAAT AAACCAACTT GTGACGGGAA ATTTGACATC TTTGTCTGAG CAAGAATTGA TTGACTGTGA
CAGAACTTAC AACAGTGGTT GCAATGGGGG GCTCATGGAT TATGCATTCT CTTTTATAGT AGAAAACGGT GGACTCCATA
AAGAGGAAGA CTATCCTTAC ATTATGGAGG AGGGTACTTG CGAGATGACA AAGGAAGAAA CTGAAGTTGT CACAATTAGC
GGGTACCATG ACGTCCCACA AAACAATGAA CAGAGCCTAT TGAAGGCTCT TGCGAACCAA CCCCTCAGTG TGGCCATAGA
GGCTTCAAGC AGAGATTTCC AATTTTACAG TGGGGGTGTT TTTGATGGAC ATTGCGGAAG TGACTTAGAT CACGGAGTGG
CAGCTGTTGG ATACGGAACT TCAAAAGGAG TGGATTATAT CATCGTGAAA AATTCATGGG GATCTAAGTG GGGAGAAAAA
GGGTACATAA GAATGAAGAG AAACATCGGA AAACCTGAAG GAATCTGCGG AATCTATAAG ATGGCTTCTT ATCCTACCAA
GAAGAAATAA 

>Vigan.02G017700.01
MAFSSSKLLL LACSFCLFSS LAFGRDFSIV GYSSEDLNSM DKLIELFESW MSRYGKIYES IEEKLLRFDI FKDNLKHIDE
RNNVISNYWL GLNEFADLSH QEFKNKYLGL KVDYSRRRES QEEFTYKDVE LPKSVDWRKK GAVTQVKNQG SCGSCWAFST
VAAVEGINQL VTGNLTSLSE QELIDCDRTY NSGCNGGLMD YAFSFIVENG GLHKEEDYPY IMEEGTCEMT KEETEVVTIS
GYHDVPQNNE QSLLKALANQ PLSVAIEASS RDFQFYSGGV FDGHCGSDLD HGVAAVGYGT SKGVDYIIVK NSWGSKWGEK
GYIRMKRNIG KPEGICGIYK MASYPTKKK*