GBrowse Details

Vigan.02G018500.01

Basic Information:
Name: Vigan.02G018500.01
Multiple alignment
Variant Information
Position: Chr02:1274870..1276529 (- strand)
Length: 1660
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7AQX1, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
InterPro: Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain (IPR001179)
Peptidyl-prolyl cis-trans isomerase, FKBP-type (IPR023566)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.57,13.36,43.68,1.25,7.03,1.39,8.52
Arabidopsis thaliana homolog: AT1G20810.1
Automatic updates:
Name: NM_001249179 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527183 (LOC100527183), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:1274870..1275042 (- strand)
Length: 173
Type: three_prime_UTR
Position: Chr02:1275043..1275096 (- strand)
Length: 54
Type: CDS
Position: Chr02:1275396..1275455 (- strand)
Length: 60
Type: CDS
Position: Chr02:1275569..1275718 (- strand)
Length: 150
Type: CDS
Position: Chr02:1275833..1275919 (- strand)
Length: 87
Type: CDS
Position: Chr02:1276008..1276078 (- strand)
Length: 71
Type: CDS
Position: Chr02:1276226..1276478 (- strand)
Length: 253
Type: CDS
Position: Chr02:1276479..1276529 (- strand)
Length: 51
Type: five_prime_UTR


>Vigan.02G018500.01
GCAAAGCATG TGGCGCGCGC GAGAGAGAGA GAAAGAGAGA GAGTTTTGGC AATGAGTTCG TCTTGCGCTT GCGCTTGCGC
TTCTAATTCA ACAAATTGGA GCATTGATTA TGGAGATGCA ATGCTTTCAA ATTCAAAGCG AATCAGGTCA ACGAAAATCG
CCATGCCACA CTCAGTTTCT GGTTCCAGAA GATCCACGGC GCTTCTCATT TCATCGTTGC CGTTCACCTT CCTTTTGCTC
TCTCCGTCGG CGGAGGCCAG ACGCAACAAG AAGACAATTC CCCAAGAGGA ATACCTCACA ACTCCTGATG GATTGAAATA
CTATGATTTG GTTGAGGGCA AAGGTCCAGT AGCTGAAAAA GGAACAACCG TTCAGGTGCA CTTTGATTGC TTATATCGCG
GGATCACAGC TGTATCCAGT CGCGAATCTA AACTCCTAGC GGGAAATCGT ATCATTGCTC AGCCGTACGC ATTCAGGGTG
GGAGCTCCTC CGGGAAAGGA AAGAAAACGT GAATTTGTTG ATAATCCAAA TGGTTTATTC TCTGCTCAAG CAGCACCCAA
ACCTCCACCT GCTATGTATA CAATAGTCGA GGGAATGCGA GTTGGTGGAA AGCGAACTGT TATTGTTCCT CCTGAAAATG
GGTATGGACA AAAGGGAATG AACGAGATTC CGCCTGGAGC TACATTTGAA CTAAATGTTG AGCTTCTGCA AGTTTTAGCT
ACGTGAAGAC CAGAGTGAGC TTGACTCCAT TCTTTGAAGC TGTTGATATT TAACTTCAGA ATTTGTATTC TATGGGGCTT
GCGGCTATTT TATTCTCATT AACTTTTTTT ATGATTGTCT TCTAGCCATT GTTACAATAG AAAGTTTTTG CAATATGAAA
GAGAAAATGA AGAAAAAAG

>Vigan.02G018500.01
ATGAGTTCGT CTTGCGCTTG CGCTTGCGCT TCTAATTCAA CAAATTGGAG CATTGATTAT GGAGATGCAA TGCTTTCAAA
TTCAAAGCGA ATCAGGTCAA CGAAAATCGC CATGCCACAC TCAGTTTCTG GTTCCAGAAG ATCCACGGCG CTTCTCATTT
CATCGTTGCC GTTCACCTTC CTTTTGCTCT CTCCGTCGGC GGAGGCCAGA CGCAACAAGA AGACAATTCC CCAAGAGGAA
TACCTCACAA CTCCTGATGG ATTGAAATAC TATGATTTGG TTGAGGGCAA AGGTCCAGTA GCTGAAAAAG GAACAACCGT
TCAGGTGCAC TTTGATTGCT TATATCGCGG GATCACAGCT GTATCCAGTC GCGAATCTAA ACTCCTAGCG GGAAATCGTA
TCATTGCTCA GCCGTACGCA TTCAGGGTGG GAGCTCCTCC GGGAAAGGAA AGAAAACGTG AATTTGTTGA TAATCCAAAT
GGTTTATTCT CTGCTCAAGC AGCACCCAAA CCTCCACCTG CTATGTATAC AATAGTCGAG GGAATGCGAG TTGGTGGAAA
GCGAACTGTT ATTGTTCCTC CTGAAAATGG GTATGGACAA AAGGGAATGA ACGAGATTCC GCCTGGAGCT ACATTTGAAC
TAAATGTTGA GCTTCTGCAA GTTTTAGCTA CGTGA

>Vigan.02G018500.01
MSSSCACACA SNSTNWSIDY GDAMLSNSKR IRSTKIAMPH SVSGSRRSTA LLISSLPFTF LLLSPSAEAR RNKKTIPQEE
YLTTPDGLKY YDLVEGKGPV AEKGTTVQVH FDCLYRGITA VSSRESKLLA GNRIIAQPYA FRVGAPPGKE RKREFVDNPN
GLFSAQAAPK PPPAMYTIVE GMRVGGKRTV IVPPENGYGQ KGMNEIPPGA TFELNVELLQ VLAT*