GBrowse Details

Vigan.02G020900.01

Basic Information:
Name: Vigan.02G020900.01
Multiple alignment
Variant Information
Position: Chr02:1466259..1471296 (- strand)
Length: 5038
Functional Information:
Description: Similar to Catalase. [P32290, Vigna radiata var. radiata]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalase activity (GO:0004096)
Molecular Function: heme binding (GO:0020037)
InterPro: Catalase haem-binding site (IPR002226)
Catalase immune-responsive domain (IPR010582)
Catalase core domain (IPR011614)
Catalase, mono-functional, haem-containing (IPR018028)
Catalase-like domain (IPR020835)
Catalase active site (IPR024708)
Catalase, mono-functional, haem-containing, clades 1 and 3 (IPR024711)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1693.90,157.54,136.82,863.94,144.62,116.25,50.89,93.14
Arabidopsis thaliana homolog: AT1G20620.1, AT1G20630.1, AT4G35090.1
Automatic updates:
Name: NM_001253092 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max catalase (CAT5), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:1466259..1467243 (- strand)
Length: 985
Type: three_prime_UTR
Position: Chr02:1467244..1467303 (- strand)
Length: 60
Type: CDS
Position: Chr02:1467408..1467501 (- strand)
Length: 94
Type: CDS
Position: Chr02:1467583..1467650 (- strand)
Length: 68
Type: CDS
Position: Chr02:1468159..1468248 (- strand)
Length: 90
Type: CDS
Position: Chr02:1468430..1469206 (- strand)
Length: 777
Type: CDS
Position: Chr02:1469450..1469727 (- strand)
Length: 278
Type: CDS
Position: Chr02:1470752..1470848 (- strand)
Length: 97
Type: CDS
Position: Chr02:1471085..1471099 (- strand)
Length: 15
Type: CDS
Position: Chr02:1471100..1471296 (- strand)
Length: 197
Type: five_prime_UTR


>Vigan.02G020900.01
CAGAAATTCA TTGATAATTA ATAATTATGT TATATTTAAA AAATAAAAGA CAAGTATGAA ATATCAGAAA AGAAAAAGAA
AATAATGTCT TTATAAGGCC GTAAGACTCG CGATTGCCAC ACGAAACGAA ACAGAGTTGC CGTTTTCCTA ATCTCATTCT
CATCCTCTTC TTTCGTCTCT CAGTCTCATC CGTTACCATG GATCCCTACA AGCACCGGCC ATCCAGCGCT TTTAATTCTC
CCTTCTGGAC TACAAATTCT GGTGCTCCTG TTTGGAACAA CAACAACTCT TTAACTGTTG GAACTAGAGG TCCAATTCTC
CTGGAGGATT ATCATCTTGT TGAAAAGCTT GCAAACTTTG ACAGGGAACG GATCCCAGAG CGTGTTGTCC ATGCCAGGGG
TGCTAGTGCA AAGGGTTTCT TTGAGGTCAC ACATGACGTT TCTCACCTGA CATGTGCAGA TTTCCTTCGA GCTCCTGGAG
TTCAGACACC AGTAATTGTC CGTTTTTCAA CTGTCATCCA TGAGCGTGGT AGCCCTGAAA CTTTGAGGGA CCCTCGAGGT
TTTGCTGTGA AATTTTACAC CAGAGAGGGT AACTTTGATC TTGTTGGAAA CAACCTTCCC GTCTTCTTTG TACGTGACGG
CATGAAGTTT CCAGATATGG TCCATGCTCT TAAACCCAAC CCTAAGAACC ACATCCAGGA GAATTGGAGG ATCCTTGACT
TCTTCTCTCA CTTCCCGGAA AGCCTTCACA TGTTCTCCTT TTTATTTGAT GATTTGGGTG TTCCGCAAGA TTACAGGCAT
ATGGATGGTT TTGGAGTTAA CACATATACC CTGATCAACA AGGCTGGGAA AGCACTGTAT GTGAAATTTC ACTGGAAGAC
CACGAGTGGT GTGAAGTGTC TATTGGAGGA AGAGGCCATT AAGGTGGGAG GAGCCAACCA TAGCCATGCT ACACAAGACC
TTCATGATTC GATTGCTGCT GGTAACTATC CTGAGTGGAA ACTATTCATT CAGACAATAG ATCCTGAGCA CGAAGACAAA
TTTGACTTTG ACCCTCTTGA TGTAACCAAG ACTTGGCCCG AGGACATTAT ACCCTTGCAG CCTGTTGGTC GCTTGGTCCT
GAATAAGAAC ATAGATAACT TCTTTGCTGA GAATGAGCAA CTTGCATTTT GCCCTGCCAT AATAGTTCCT GGTGTATATT
ACTCTGATGA TAAGATGCTT CAAACCAGGA TATTCTCTTA TGCTGATTCA CAGAGGCACA GGCTTGGACC AAACTATCTG
CAACTTCCTG CCAATGCTCC CAAGTGTGCT CACCACAACA ATCACCATGA AGGTTTCATG AATTTCATCC ACAGGGATGA
GGAGGTCAAT TACTTCCCCT CAAGGTATGA TCCTGTTCGT CATGCAGAAA GGTTCCCCAT ACCTCCTGCT ATCTGCTCTG
GAAGGCGTGA AAAGAATGCA ATTGAGAAGG AGAACAACTT CAAGCAGGCT GGAGAGAGAT TCCGATCTTG GGCACCTGAC
AGGCAAGATA GATTTATCCG CCGATGGGTT GATGCTTTAT CTGACCCACG TGTCACTCAT GAAATCCGCA GTGTCTGGAT
ATCATACTGG TCTCAGGCTG ACCGTTCTCT TGGCCAAAAG ATAGCATCTC ATCTGAACAT GAGGCCAAAT ATTTAATGTT
GTTACCAACC CCAGAATGAT TGCAAGAGTT GCAGTCGTGT AAAGAGTACG ATAAGAATGT GATTTTGAAA CCTTTGGAAG
GACTAATCCT TTTCTTGCAT TATTATGTTG TATAACTCAT AGGTCTCCAT GCATGCAACT CGTTGAGCTA TCTTGTTGCC
GTTTGTGTGT TAGTATTTAT TTACCTTATC GGCATGTTTC CCTGCTACTG TTGTGGACTG TGTTCCTCCT AGCTATTCTA
TTAAGAAAGT ATTAAATAAA AAGAATAACG ATAATTTTAA ATCATTCTAA ACTTTTATTA CCATATATAC ATCTAAGCAC
ATATGATTCA ATTGTTAGGC ATACTCTGAC ATGATCAGCT GGAAATTTAC GTCAGAGGCT CAATGGGTCC AATGAAGCTG
CTTCATATTA TTGTTTAAAG GTTGTTCAAA TTCAAAATGA AAATCGACCA ATAACAAAAT GTCAACATGA ATTTGTAGGG
TGGGTTGTGT TGATTAGAAC TTCCATTCTT CCTGGCAGAT AGCTTTGACC TTAAACTCTT GGTCATCTTC ATGCAAACTC
GTTTCTTTTA TTTTTCTTTT ACATTTGCCT CTTATTTAAG CCTCACTGAT GAAGTCTATT CCCGTTTATT TATTTTTGCA
CAAAATTTAA ATACGATATT TGTTTAATGT CCTTGTTGTG TTATGTTTAA TAACAATTGG AGCAACTTTG GAACAACACT
GAAATTTGTC TCATACATTT AAAGTGACAC TGATTGTAAT CGAAGACACC AAAAACATCT AAAAAAACTG AATTTAGGCT
TTGTCCTAAT TCTCTCTTCT GGTTGGTGAT GATGAGACCC TTTCATCATC TATCTTCTCA TTTTCTCATT TCACCGTTTT
CATTTACCCC TTGCAAGTAT TCTCTTAAAA TATTGAAGAA TCTCTCAAGC TCATCTATTT TGTTATTTAT TTATTATGCA
ACTCTGATAA TTCTATGAAG C

>Vigan.02G020900.01
ATGGATCCCT ACAAGCACCG GCCATCCAGC GCTTTTAATT CTCCCTTCTG GACTACAAAT TCTGGTGCTC CTGTTTGGAA
CAACAACAAC TCTTTAACTG TTGGAACTAG AGGTCCAATT CTCCTGGAGG ATTATCATCT TGTTGAAAAG CTTGCAAACT
TTGACAGGGA ACGGATCCCA GAGCGTGTTG TCCATGCCAG GGGTGCTAGT GCAAAGGGTT TCTTTGAGGT CACACATGAC
GTTTCTCACC TGACATGTGC AGATTTCCTT CGAGCTCCTG GAGTTCAGAC ACCAGTAATT GTCCGTTTTT CAACTGTCAT
CCATGAGCGT GGTAGCCCTG AAACTTTGAG GGACCCTCGA GGTTTTGCTG TGAAATTTTA CACCAGAGAG GGTAACTTTG
ATCTTGTTGG AAACAACCTT CCCGTCTTCT TTGTACGTGA CGGCATGAAG TTTCCAGATA TGGTCCATGC TCTTAAACCC
AACCCTAAGA ACCACATCCA GGAGAATTGG AGGATCCTTG ACTTCTTCTC TCACTTCCCG GAAAGCCTTC ACATGTTCTC
CTTTTTATTT GATGATTTGG GTGTTCCGCA AGATTACAGG CATATGGATG GTTTTGGAGT TAACACATAT ACCCTGATCA
ACAAGGCTGG GAAAGCACTG TATGTGAAAT TTCACTGGAA GACCACGAGT GGTGTGAAGT GTCTATTGGA GGAAGAGGCC
ATTAAGGTGG GAGGAGCCAA CCATAGCCAT GCTACACAAG ACCTTCATGA TTCGATTGCT GCTGGTAACT ATCCTGAGTG
GAAACTATTC ATTCAGACAA TAGATCCTGA GCACGAAGAC AAATTTGACT TTGACCCTCT TGATGTAACC AAGACTTGGC
CCGAGGACAT TATACCCTTG CAGCCTGTTG GTCGCTTGGT CCTGAATAAG AACATAGATA ACTTCTTTGC TGAGAATGAG
CAACTTGCAT TTTGCCCTGC CATAATAGTT CCTGGTGTAT ATTACTCTGA TGATAAGATG CTTCAAACCA GGATATTCTC
TTATGCTGAT TCACAGAGGC ACAGGCTTGG ACCAAACTAT CTGCAACTTC CTGCCAATGC TCCCAAGTGT GCTCACCACA
ACAATCACCA TGAAGGTTTC ATGAATTTCA TCCACAGGGA TGAGGAGGTC AATTACTTCC CCTCAAGGTA TGATCCTGTT
CGTCATGCAG AAAGGTTCCC CATACCTCCT GCTATCTGCT CTGGAAGGCG TGAAAAGAAT GCAATTGAGA AGGAGAACAA
CTTCAAGCAG GCTGGAGAGA GATTCCGATC TTGGGCACCT GACAGGCAAG ATAGATTTAT CCGCCGATGG GTTGATGCTT
TATCTGACCC ACGTGTCACT CATGAAATCC GCAGTGTCTG GATATCATAC TGGTCTCAGG CTGACCGTTC TCTTGGCCAA
AAGATAGCAT CTCATCTGAA CATGAGGCCA AATATTTAA

>Vigan.02G020900.01
MDPYKHRPSS AFNSPFWTTN SGAPVWNNNN SLTVGTRGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD
VSHLTCADFL RAPGVQTPVI VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNL PVFFVRDGMK FPDMVHALKP
NPKNHIQENW RILDFFSHFP ESLHMFSFLF DDLGVPQDYR HMDGFGVNTY TLINKAGKAL YVKFHWKTTS GVKCLLEEEA
IKVGGANHSH ATQDLHDSIA AGNYPEWKLF IQTIDPEHED KFDFDPLDVT KTWPEDIIPL QPVGRLVLNK NIDNFFAENE
QLAFCPAIIV PGVYYSDDKM LQTRIFSYAD SQRHRLGPNY LQLPANAPKC AHHNNHHEGF MNFIHRDEEV NYFPSRYDPV
RHAERFPIPP AICSGRREKN AIEKENNFKQ AGERFRSWAP DRQDRFIRRW VDALSDPRVT HEIRSVWISY WSQADRSLGQ
KIASHLNMRP NI*