GBrowse Details

Vigan.02G021500.01

Basic Information:
Name: Vigan.02G021500.01
Multiple alignment
Variant Information
Position: Chr02:1508974..1513855 (- strand)
Length: 4882
Functional Information:
Description: Similar to uncharacterized protein. [B8AFJ4, Oryza sativa subsp. indica]
InterPro: Protein of unknown function DUF760 (IPR008479)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.26,9.26,16.98,27.19,8.70,12.49,9.60,12.51
Arabidopsis thaliana homolog: AT1G63610.2
Automatic updates:
Name: NM_001253232 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100815202 (LOC100815202), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:1508974..1509478 (- strand)
Length: 505
Type: three_prime_UTR
Position: Chr02:1509479..1509640 (- strand)
Length: 162
Type: CDS
Position: Chr02:1510653..1510745 (- strand)
Length: 93
Type: CDS
Position: Chr02:1511105..1511323 (- strand)
Length: 219
Type: CDS
Position: Chr02:1512189..1512323 (- strand)
Length: 135
Type: CDS
Position: Chr02:1512843..1512923 (- strand)
Length: 81
Type: CDS
Position: Chr02:1513048..1513137 (- strand)
Length: 90
Type: CDS
Position: Chr02:1513481..1513735 (- strand)
Length: 255
Type: CDS
Position: Chr02:1513736..1513855 (- strand)
Length: 120
Type: five_prime_UTR


>Vigan.02G021500.01
TGGAAAATCA CGTGTGAGCC TCATCCCTGG GAATTAGGAA GCAGAAGAAT GGGACTCCAC AGTTGCAATA TGAAACCTTT
CTCTCTGTGA AACCAGAAAC AGATTATTTA ACCTTTAATC ATGTATTCCT TCACTGTGAA ACCCTTTTTC GTACCTCAAT
TTATTTCTTC TTCTTCTTCT TCTTCAACTT CTACTTCCTC CTCTTCAATT TCTCTCGCCT CCTTCTCATC TCGTTCTCTC
TCATCAATTA GCTTTTCCAG AAATTCAAAG CACAGAGGAA GGTTTGGTCT GAAAGTTGAA GCTTATGATT CCTCCAACAA
CGACGCTTCT AAACCTTCAA GTGCTGGCGA TTCCAAACCC CCTAATGGCA CTTTGTCAAA GAGCAGGAGA GAAATTTTAC
TGGAATATGT CAAGAACGTG CAGCCAGAAT TTATGGAATT GTTTGTGAAA AGAGCGCCTC AACAGGTTGT GGATGCAATG
CGCCAAACAG TGACAAATAT GATTGGAACA CTGCCCCCTC AATTTTTTGC TGTAACAATT ACCACTGTAG CTGAAAATCT
TGCACAGCTC ATGTACAGTG TCATAATGAC TGGATACATG TTCAGGAATG CACAATACCG TTTGGAGTTG CAAGAAAGTT
TGGAACAAGT TGCTGCCCTG CCAGATGTGC AAGATAAAAA GGATGTGTCA GATTATGCCC CTGGCACACA AAAAAATGTT
TCAGGTGAAG TTATTCGGTG GAATAATGTT TCTGGGGCTG AGAAAATAGA TGCTAAAAAG TACATTGAAT TACTTGAAGC
GGAGATTGAG GAGCTGAATC GTCAAGTTGG AAGACAATCT AGCAATGCAC AAAATGAACT ATTAGAATAC CTAAAATCTC
TCGAGCCTCG AAATTTGAAG GAGTTGACTA GCAGTGCTGG TGAGGATGTA GTGTTTGCTA TGAATACGTT TATAAAGCGA
TTGCTGGCTG TTTCAGATCC TAGCCAAATG AAGACTAGCG TGACGGAGAC CAGTGCAGCT GAACTTGCTA AGCTGCTTTA
TTGGTTGATG GTGGTTGGGT ACAGCATTCG CAATATTGAA GTTCGTTTTG ATATGGAAAG AGTACTTGGC ACTTCTCCAA
AGCTGGCTGA ATTGCCACCA GGTGAAAATG TTTAAACAAT CTTGAATAAA CTAGGTCATT GAAGTGCTAA TGTCCACAAG
TTCTAAGTGG CCTATTTAGA TTTTGCACTT TTTTGGTTGA TTGGCTGAAT GAATGGCCAC GACCTAAAAG AGAAGTCTGC
ATTTTTCAGC GGCCTTTGAA TGATTGGTCT CCTGATAGAT TATTTAATAT ATCTGATGGA CATCATTTTT TCTCTGGGTA
CTATGAAAAC TCTTATTCGC AATCATCTGA CAACGATATC AGGGTTGATT TCCCTGAAGA TGTGCTATGC CTCTATTTTT
ATGTTACTTC TTTGACTGTC TGAACCCTGG TGATTCTTTA TAAAGGCAGC AGTGATCTTG GTCCCCTTTT CAGCGTTTCT
ATATTCTTCG CCAGAATGCA TCAACATATA TTCTTTTTGT TATGTACGGT GAGCTGAGTT ATTCTTCCTA GATTTATTTT
AAATTGTTAT ATTTTCTAAT TTCATATTTT AATCTTGTTA TTCTTTTAAT TTCTAGTTCA 

>Vigan.02G021500.01
ATGTATTCCT TCACTGTGAA ACCCTTTTTC GTACCTCAAT TTATTTCTTC TTCTTCTTCT TCTTCAACTT CTACTTCCTC
CTCTTCAATT TCTCTCGCCT CCTTCTCATC TCGTTCTCTC TCATCAATTA GCTTTTCCAG AAATTCAAAG CACAGAGGAA
GGTTTGGTCT GAAAGTTGAA GCTTATGATT CCTCCAACAA CGACGCTTCT AAACCTTCAA GTGCTGGCGA TTCCAAACCC
CCTAATGGCA CTTTGTCAAA GAGCAGGAGA GAAATTTTAC TGGAATATGT CAAGAACGTG CAGCCAGAAT TTATGGAATT
GTTTGTGAAA AGAGCGCCTC AACAGGTTGT GGATGCAATG CGCCAAACAG TGACAAATAT GATTGGAACA CTGCCCCCTC
AATTTTTTGC TGTAACAATT ACCACTGTAG CTGAAAATCT TGCACAGCTC ATGTACAGTG TCATAATGAC TGGATACATG
TTCAGGAATG CACAATACCG TTTGGAGTTG CAAGAAAGTT TGGAACAAGT TGCTGCCCTG CCAGATGTGC AAGATAAAAA
GGATGTGTCA GATTATGCCC CTGGCACACA AAAAAATGTT TCAGGTGAAG TTATTCGGTG GAATAATGTT TCTGGGGCTG
AGAAAATAGA TGCTAAAAAG TACATTGAAT TACTTGAAGC GGAGATTGAG GAGCTGAATC GTCAAGTTGG AAGACAATCT
AGCAATGCAC AAAATGAACT ATTAGAATAC CTAAAATCTC TCGAGCCTCG AAATTTGAAG GAGTTGACTA GCAGTGCTGG
TGAGGATGTA GTGTTTGCTA TGAATACGTT TATAAAGCGA TTGCTGGCTG TTTCAGATCC TAGCCAAATG AAGACTAGCG
TGACGGAGAC CAGTGCAGCT GAACTTGCTA AGCTGCTTTA TTGGTTGATG GTGGTTGGGT ACAGCATTCG CAATATTGAA
GTTCGTTTTG ATATGGAAAG AGTACTTGGC ACTTCTCCAA AGCTGGCTGA ATTGCCACCA GGTGAAAATG TTTAA

>Vigan.02G021500.01
MYSFTVKPFF VPQFISSSSS SSTSTSSSSI SLASFSSRSL SSISFSRNSK HRGRFGLKVE AYDSSNNDAS KPSSAGDSKP
PNGTLSKSRR EILLEYVKNV QPEFMELFVK RAPQQVVDAM RQTVTNMIGT LPPQFFAVTI TTVAENLAQL MYSVIMTGYM
FRNAQYRLEL QESLEQVAAL PDVQDKKDVS DYAPGTQKNV SGEVIRWNNV SGAEKIDAKK YIELLEAEIE ELNRQVGRQS
SNAQNELLEY LKSLEPRNLK ELTSSAGEDV VFAMNTFIKR LLAVSDPSQM KTSVTETSAA ELAKLLYWLM VVGYSIRNIE
VRFDMERVLG TSPKLAELPP GENV*