GBrowse Details

Vigan.02G025100.01

Basic Information:
Name: Vigan.02G025100.01
Multiple alignment
Variant Information
Position: Chr02:1836038..1838121 (+ strand)
Length: 2084
Functional Information:
Description: Similar to Uncharacterized protein. [I1K7H3, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.77,20.35,21.96,0.17,1.33,9.56,11.15,0.75
Automatic updates:
Name: NM_001255002 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative expansin (LOC100527629), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:1836038..1836292 (+ strand)
Length: 255
Type: five_prime_UTR
Position: Chr02:1836293..1836431 (+ strand)
Length: 139
Type: CDS
Position: Chr02:1836995..1837316 (+ strand)
Length: 322
Type: CDS
Position: Chr02:1837412..1837718 (+ strand)
Length: 307
Type: CDS
Position: Chr02:1837719..1838121 (+ strand)
Length: 403
Type: three_prime_UTR


>Vigan.02G025100.01
GGAAATTGTC AGAGAAGAGA ACGTGGGAAT AATTGAATGA CATCTAGAAT TGTACTGTTC ACACACATGA ATTTAATAAT
GTAATAAATG ATAATTCACA TGTGTCATCT TACTCTGGTC CCTTATTTAA AGACTGCTGA TTTGGTGTTG AGAAATGACA
ATAAATGTAA CTAAAACAAA TAGAAATCCT CTCACTCACT GCACACTACT CTTTCAATTT AGTCTCCAAC ATTCTTAGCT
TGAGGCAATA TACTAATGGC CTCTGTGATG TTTGTTTTGG TAAGCTACCT CATATTTTGT TGTTTCTCAG TTCACAGTTT
TGCCTTCTCA CTTTCTGGAT GGACCAATGC ACATGCCACC TTTTATGGAG GTAGTGATGC CTCTGGGACA ATGGGAGGAG
CATGTGGGTA TGGGAATCTG TATTCAACAG GGTATGGGAC TGATACAGCA GCACTGAGTA CTGCATTATT TAACGATGGA
GCTTCGTGTG GGGAGTGTTA CAAAATCATG TGCGATTATC AAGCAGATCC GAAATGGTGC TTGAAAGGAA CATCTGTAAC
CATAACTGCC ACAAACTTCT GCCCTCCCAA TTTCGCTCTG CCAAGCAACA ACGGTGGCTG GTGCAACCCT CCTCTCAAAC
ACTTTGACAT GGCTCAACCC GCATGGGAAA AGATTGGTAT CTATAGAGGA GGGATCGTGC CCGTTTTGTT CCAAAGGGTT
GCATGCACGA AGAAGGGAGG GGTTAGGTTC AGTGTGAATG GGAGAGACTA CTTTGAGCTT GTGCTGATCA ACAACGTGGG
AGGAGCTGGA TCTATTCAAT CTGTGTCCAT CAAAGGCTCA AAAACTGGGT GGATGACTAT GTCAAGAAAT TGGGGTGCTA
ATTGGCAATC CAATGCCTAT TTGAATGGTC AATCTCTGTC TTTCCGAGTC ACAACAACCG ATGGTGTCAC CAAACTTTTT
CAAAATGTTG TTCCATCCAA TTGGGCTTTT GGCCAGAGTT TCTCTACCAG TGTTCAGTTT TAGGACGACA AGGGTTATTG
AGTTGTGGGT TTTGGAGTTT CCGATGAACG AAACGGCAGA GGCGTGCCTG TTATTTTGCC GGAGCAGCCC GCCACCCTTA
TCTTCTGCTT TTGAATTTGG TAAATTTGGT AAATATGGTA CGATCGAACC CATCAACTTG ATGCCCATGA TGAAGAACCC
TAAATAGACA TTCCAATTGC CTGAGTTATT ACAGAGAATC ATTGTTAGTT GTTGTGTGAT TCCTGTATAA ATGAACTTCT
TCAGAGTTTG AATCATACTA TGAACTATAA AGTGCTGCTC TATTCAGAGA ATTCGGAAAG GGGAACACTC TAATTCCCTG
AAATTCTATA TATTTGTAAG TCTAGGAGCT ATGTATTGCT TTTGCTAATT TGTTCTTCAG TTTCAC

>Vigan.02G025100.01
ATGGCCTCTG TGATGTTTGT TTTGGTAAGC TACCTCATAT TTTGTTGTTT CTCAGTTCAC AGTTTTGCCT TCTCACTTTC
TGGATGGACC AATGCACATG CCACCTTTTA TGGAGGTAGT GATGCCTCTG GGACAATGGG AGGAGCATGT GGGTATGGGA
ATCTGTATTC AACAGGGTAT GGGACTGATA CAGCAGCACT GAGTACTGCA TTATTTAACG ATGGAGCTTC GTGTGGGGAG
TGTTACAAAA TCATGTGCGA TTATCAAGCA GATCCGAAAT GGTGCTTGAA AGGAACATCT GTAACCATAA CTGCCACAAA
CTTCTGCCCT CCCAATTTCG CTCTGCCAAG CAACAACGGT GGCTGGTGCA ACCCTCCTCT CAAACACTTT GACATGGCTC
AACCCGCATG GGAAAAGATT GGTATCTATA GAGGAGGGAT CGTGCCCGTT TTGTTCCAAA GGGTTGCATG CACGAAGAAG
GGAGGGGTTA GGTTCAGTGT GAATGGGAGA GACTACTTTG AGCTTGTGCT GATCAACAAC GTGGGAGGAG CTGGATCTAT
TCAATCTGTG TCCATCAAAG GCTCAAAAAC TGGGTGGATG ACTATGTCAA GAAATTGGGG TGCTAATTGG CAATCCAATG
CCTATTTGAA TGGTCAATCT CTGTCTTTCC GAGTCACAAC AACCGATGGT GTCACCAAAC TTTTTCAAAA TGTTGTTCCA
TCCAATTGGG CTTTTGGCCA GAGTTTCTCT ACCAGTGTTC AGTTTTAG

>Vigan.02G025100.01
MASVMFVLVS YLIFCCFSVH SFAFSLSGWT NAHATFYGGS DASGTMGGAC GYGNLYSTGY GTDTAALSTA LFNDGASCGE
CYKIMCDYQA DPKWCLKGTS VTITATNFCP PNFALPSNNG GWCNPPLKHF DMAQPAWEKI GIYRGGIVPV LFQRVACTKK
GGVRFSVNGR DYFELVLINN VGGAGSIQSV SIKGSKTGWM TMSRNWGANW QSNAYLNGQS LSFRVTTTDG VTKLFQNVVP
SNWAFGQSFS TSVQF*