VIGGS:GBrowse

Vigan.02G027400.01

Basic Information:

Name:	Vigan.02G027400.01 Multiple alignment Variant Information
Position:	Chr02:2031854..2035493 (+ strand)
Length:	3640

Functional Information:

Description:	Similar to Uncharacterized protein. [I1K7J4, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: microtubule-based process (GO:0007017)
	Biological Process: protein polymerization (GO:0051258)
	Cellular Component: microtubule (GO:0005874)
	Cellular Component: protein complex (GO:0043234)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: structural constituent of cytoskeleton (GO:0005200)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Tubulin (IPR000217)
	Beta tubulin (IPR002453)
	Tubulin/FtsZ, GTPase domain (IPR003008)
	Tubulin/FtsZ, C-terminal (IPR008280)
	Beta tubulin, autoregulation binding site (IPR013838)
	Tubulin, conserved site (IPR017975)
	Tubulin/FtsZ, 2-layer sandwich domain (IPR018316)
	Tubulin, C-terminal (IPR023123)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.84,1.76,305.48,100.03,131.37,700.25,237.55,388.54
Arabidopsis thaliana homolog:	AT1G20010.1, AT1G75780.1, AT2G29550.1, AT4G20890.1, AT5G12250.1, AT5G23860.1, AT5G44340.1, AT5G62690.1, AT5G62700.1

Automatic updates:

Name:	NM_001255921 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max tubulin beta-1 chain-like (LOC100781043), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001279009 NCBI(nuccore)
Organism:	Cicer arietinum
Description:	Cicer arietinum tubulin, beta class I (TUBB), mRNA.
PubMed ID:	20399753 NCBI(pubmed)
PubMed ID:	9678576 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001354292 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max tubulin beta chain (LOC100819883), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:2031854..2032152 (+ strand)
Length:	299
Type:	five_prime_UTR

Position:	Chr02:2032153..2032552 (+ strand)
Length:	400
Type:	CDS

Position:	Chr02:2034166..2034435 (+ strand)
Length:	270
Type:	CDS

Position:	Chr02:2034524..2035206 (+ strand)
Length:	683
Type:	CDS

Position:	Chr02:2035207..2035493 (+ strand)
Length:	287
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G027400.01
TGAAGAAGTG GGGTCTGAGA GATAACGTGA ACGAAGTTAT GCGCTGGTAT GGTTGGTAGC GGTAACATGG CTGTCACCCT
TGAAGAATGA ACGGCACAGG ATACCTCACT CGAAAACAAA ATATCCCGCC CTCCATTATT ACCATCTTAA CCTCCGAATA
TACCTCTCTC ATCTCTTCCC AATTCCATAA ATGACTGCAC TCTCCTGAAC GCATCGCACT GCATTTGGTT CCCTTTCCCT
CTCACCGTCA AACAAAACTC CAAATCCTAA ATTTCTCTCT TCCTCTCTTC ATCGGAACCA TGAGAGAGAT CTTGCACGTT
CAGGGAGGCC AATGCGGCAA CCAAATCGGT TCCAAATTCT GGGAGGTTAT CTGCGACGAG CACGGCATAG ATCCAACCGG
AAAGTACAAC GGTCTTGGAA ACTCTGATAT CCAACTCGAG AGGATCAATG TCTATTACAA TGAGGCCTCT GGTGGAAGGT
ACGTTCCTAG AGCTGTGCTT ATGGATCTCG AACCTGGAAC CATGGACAGC ATCAGATCTG GCCCCTACGG CAAGATCTTC
CGTCCCGATA ACTTTGTCTT CGGACAGTCC GGTGCCGGTA ACAATTGGGC GAAAGGTCAT TATACCGAAG GCGCTGAATT
GATCGATTCC GTCCTCGATG TTGTTCGTAA AGAGGCTGAG AACTGTGATT GCTTGCAAGG TTTTCAAGTG TGCCACTCTC
TTGGAGGAGG CACAGGTTCG GGCATGGGAA CACTGTTGAT ATCAAAGATT AGGGAGGAAT ACCCAGATCG AATGATGCTC
ACTTTTTCTG TTTTCCCATC TCCCAAGGTT TCTGACACAG TTGTGGAGCC GTACAATGCC ACTTTATCTG TACACCAACT
GGTTGAAAAT GCAGACGAGT GCATGGTTCT TGATAATGAA GCTCTTTATG ACATTTGCTT TAGGACATTG AAACTCAGCA
CACCTAGCTT TGGCGATCTC AACCATCTTA TTTCTGCAAC CATGAGTGGG GTTACATGTT GTCTGAGGTT TCCTGGACAA
CTGAACTCTG ACCTCAGGAA GCTGGCTGTC AATCTGATTC CATTTCCCCG TCTGCACTTC TTTATGGTGG GGTTTGCACC
TCTCACTTCT CGTGGGTCTC AGCAGTATGT CTCCCTTACG GTCCCAGAGC TGACTCAGCA GATGTGGGAT GCCAAAAATA
TGATGTGTGC TGCTGATCCT AGGCATGGCC GATACTTGAC TGCATCTGCT ATGTTCAGGG GAAAGATGAG CACCAAAGAG
GTAGATGAAC AGATGATCAA TGTTCAGAAC AAGAACTCGT CTTACTTTGT TGAATGGATT CCCAACAATG TGAAGTCGAG
TGTGTGTGAT ATTCCTCCCA AGAATTTAAA GATGTCATCT ACTTTTATTG GGAACTCAAC ATCAATCCAG GAGATGTTTA
GGAGGGTGAG TGAGCAGTTC ACTGCTATGT ACAGGCGCAA GGCCTTTTTG CACTGGTACA CTGGGGAAGG AATGGACGAG
ATGGAGTTCA CAGAGGCAGA GAGCAATATG AATGATTTGG TGGCAGAGTA CCAGCAGTAC CAAGATGCAA CTGCAGATGA
GGAAGAAGAA TTTGATGAAG AAGCTGAGGA TGACCAGTAT GCTGAGCATT AGCTGGATCA AACTTAGGCT ATGCCTAATG
GTAACTACCA ATGCATGATC TACCTTTGCT GCTATTCGTG TATCTACAAC CTATGAACTT TCACTTTCAT TCCCATTTAT
CTGTTACATT TTGCCAATTT CGTTGTTAAA TGTACTGCTG TTGAATTGTT TGGAATGTGC GCGGTGGGAC AATAGTCGAT
TATTCTATCT GTTTATCCAA AAGCTTCAAG TCACTATTAA TTATTTTTTA TTTCAGTGTG GATTTTTACT TTACTAGAAT
TTAATTAAAA TGGACAAGG

[show][hide][copy]CDS

>Vigan.02G027400.01
ATGAGAGAGA TCTTGCACGT TCAGGGAGGC CAATGCGGCA ACCAAATCGG TTCCAAATTC TGGGAGGTTA TCTGCGACGA
GCACGGCATA GATCCAACCG GAAAGTACAA CGGTCTTGGA AACTCTGATA TCCAACTCGA GAGGATCAAT GTCTATTACA
ATGAGGCCTC TGGTGGAAGG TACGTTCCTA GAGCTGTGCT TATGGATCTC GAACCTGGAA CCATGGACAG CATCAGATCT
GGCCCCTACG GCAAGATCTT CCGTCCCGAT AACTTTGTCT TCGGACAGTC CGGTGCCGGT AACAATTGGG CGAAAGGTCA
TTATACCGAA GGCGCTGAAT TGATCGATTC CGTCCTCGAT GTTGTTCGTA AAGAGGCTGA GAACTGTGAT TGCTTGCAAG
GTTTTCAAGT GTGCCACTCT CTTGGAGGAG GCACAGGTTC GGGCATGGGA ACACTGTTGA TATCAAAGAT TAGGGAGGAA
TACCCAGATC GAATGATGCT CACTTTTTCT GTTTTCCCAT CTCCCAAGGT TTCTGACACA GTTGTGGAGC CGTACAATGC
CACTTTATCT GTACACCAAC TGGTTGAAAA TGCAGACGAG TGCATGGTTC TTGATAATGA AGCTCTTTAT GACATTTGCT
TTAGGACATT GAAACTCAGC ACACCTAGCT TTGGCGATCT CAACCATCTT ATTTCTGCAA CCATGAGTGG GGTTACATGT
TGTCTGAGGT TTCCTGGACA ACTGAACTCT GACCTCAGGA AGCTGGCTGT CAATCTGATT CCATTTCCCC GTCTGCACTT
CTTTATGGTG GGGTTTGCAC CTCTCACTTC TCGTGGGTCT CAGCAGTATG TCTCCCTTAC GGTCCCAGAG CTGACTCAGC
AGATGTGGGA TGCCAAAAAT ATGATGTGTG CTGCTGATCC TAGGCATGGC CGATACTTGA CTGCATCTGC TATGTTCAGG
GGAAAGATGA GCACCAAAGA GGTAGATGAA CAGATGATCA ATGTTCAGAA CAAGAACTCG TCTTACTTTG TTGAATGGAT
TCCCAACAAT GTGAAGTCGA GTGTGTGTGA TATTCCTCCC AAGAATTTAA AGATGTCATC TACTTTTATT GGGAACTCAA
CATCAATCCA GGAGATGTTT AGGAGGGTGA GTGAGCAGTT CACTGCTATG TACAGGCGCA AGGCCTTTTT GCACTGGTAC
ACTGGGGAAG GAATGGACGA GATGGAGTTC ACAGAGGCAG AGAGCAATAT GAATGATTTG GTGGCAGAGT ACCAGCAGTA
CCAAGATGCA ACTGCAGATG AGGAAGAAGA ATTTGATGAA GAAGCTGAGG ATGACCAGTA TGCTGAGCAT TAG

[show][hide][copy]PROTEIN

>Vigan.02G027400.01
MREILHVQGG QCGNQIGSKF WEVICDEHGI DPTGKYNGLG NSDIQLERIN VYYNEASGGR YVPRAVLMDL EPGTMDSIRS
GPYGKIFRPD NFVFGQSGAG NNWAKGHYTE GAELIDSVLD VVRKEAENCD CLQGFQVCHS LGGGTGSGMG TLLISKIREE
YPDRMMLTFS VFPSPKVSDT VVEPYNATLS VHQLVENADE CMVLDNEALY DICFRTLKLS TPSFGDLNHL ISATMSGVTC
CLRFPGQLNS DLRKLAVNLI PFPRLHFFMV GFAPLTSRGS QQYVSLTVPE LTQQMWDAKN MMCAADPRHG RYLTASAMFR
GKMSTKEVDE QMINVQNKNS SYFVEWIPNN VKSSVCDIPP KNLKMSSTFI GNSTSIQEMF RRVSEQFTAM YRRKAFLHWY
TGEGMDEMEF TEAESNMNDL VAEYQQYQDA TADEEEEFDE EAEDDQYAEH *