GBrowse Details

Vigan.02G031100.01

Basic Information:
Name: Vigan.02G031100.01
Multiple alignment
Variant Information
Position: Chr02:2331237..2335389 (- strand)
Length: 4153
Functional Information:
Description: Similar to MADS-box protein GmNMH7. [Q5VKS3, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.17,0.00,154.09,0.00,0.00,0.39,0.31,0.31
Arabidopsis thaliana homolog: AT3G54340.1
Automatic updates:
Name: KU745418 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative MADS-box protein mRNA, complete cds.
PubMed ID: 26782540 NCBI(pubmed)
Status: Known Variant
Name: NM_001249928 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MADS-box protein GmNMH7 (NMH7), mRNA.
PubMed ID: 26782540 NCBI(pubmed)
16208488 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:2331237..2331583 (- strand)
Length: 347
Type: three_prime_UTR
Position: Chr02:2331584..2331763 (- strand)
Length: 180
Type: CDS
Position: Chr02:2332066..2332110 (- strand)
Length: 45
Type: CDS
Position: Chr02:2332195..2332236 (- strand)
Length: 42
Type: CDS
Position: Chr02:2334105..2334204 (- strand)
Length: 100
Type: CDS
Position: Chr02:2334294..2334355 (- strand)
Length: 62
Type: CDS
Position: Chr02:2334440..2334506 (- strand)
Length: 67
Type: CDS
Position: Chr02:2334621..2334967 (- strand)
Length: 347
Type: CDS
Position: Chr02:2334968..2335389 (- strand)
Length: 422
Type: five_prime_UTR


>Vigan.02G031100.01
CGTTGCGTTC AACGCCGGAG GCAACAGTTA ACACGTAACA CGGAACTCGC TTCTTATGGA AATCACAGTT TTTAATGGCA
TCACTCACAG CGTTTGTTTG CTTCAGATAG GAGCCATTCA GACGGCGGAA ACTCAGATTA TAATTAAGTG GTTTTAATGA
TGCGACATTC TTAAAAATAT CATGCTGTCA TCTTACGTTA AGAGTGTTTG AAACGGAAGT GTATAATGAA AGAGTTGCCC
TAAGAATGAA GCATGGTGAA TGATGGTTAA CGGTTGGGTG ACGGAGAGAG ACGGAAAGTA AGGGTCCCCA GTGGGCACAT
GGGAGCGGCG TTGACGATGA AACGAGAAAG AGCATAGGAC GTTTATGACA AAGCCTGCAA TAGCTTTCGT TAATTTGGCA
AAGAGGTGTC CCATTTGAGG CAATGCATCT CCCCCCACCT TCCCTTTGTA TTTCCCTTTC CCTCATTAAC TCATTATCCT
ATTCCTGTTC CTATTATCAC TCAGAATTCC CAGAAGAAGC AGATAGAAAG GAACAGAAGC ATAAGCATAA GGAAGCAGAA
GCAGATACAG CAACAACAGC TATGGCTCGT GGAAAGATCC AGATCAAGAG GATAGAGAAC ACCACCAACC GCCAAGTCAC
TTACTCCAAA CGACGCAATG GCCTTTTCAA GAAGGCCAAC GAGCTCACCG TTCTCTGCGA TGCCAAGGTT TCTATTATTA
TGTTCTCCAG CACTGGCAAA CTCCACGAGT ACATTAGCCC CTCCACCTCA ACAAAACACT TCTTTGATCA ATACCAGATG
ACCCTAGGAG TTGATCTCTG GAACTCTCAC TACGAGAATA TGCAGGAGAA CTTGAAGAAA CTCAAAGAGG TCAATAAGAA
TCTTCGCAAG GAGATTAGGC AGAGGATGGG AGATTGCCTG ATCGATCTGA ATATGGAAGA TCTCAAGCTC CTGGAGGATG
AAATGGACAA GGCCGCCAAG ATTGTTCGTG AGCGTAAGTA TAAAGTGATA ACAAACCAGA TTGACACCCA AAGGAAGAAG
TTTAATAACG AGAAAGAAGT GCACAACAGA CTCTTGCGTG ACTTGGATGC AAGAGCAGAA GATCCACGTT TTGCATTGAT
AGAGAATGCA GGAGGAGAGT ACGATTCTGT GATCGGGTTC TCAAATTTAG GTCCACGCAT GTTTGCCTTG AGCCTACAGC
CAAGCCATCC TAGTGCTCAT AGCGGACCAA CCTCTGATCT CACCACTTAC CCCTTACTTT TCTAGTATGC ATCGGAAATA
CCACCTTTTC TCTCAGTTTT CAATAAGTAA TAGCCCTTAA GTTCTAAGTT CTGTTCCCTC AAACTTTACT TATATATCAC
CAAAACAATC TCACCAATCT TCTGTATGTT TCAATTAATT TGCAACTCAT CGTCAACTAT TACTTCTACT GCTATTTACC
CTAATCATAC CTGATAAACT ATTATCTCTA TGTTACTTAC TACTGTTTAC CCTAATCACA GAAATGTGTC CTCCTTTCAT
CACAGAATGT TGAGTATGAT TATTCATAGA TATAATAGTC AGTTACATCT CAGTGTTTGA AAGATTAGTC AAATCATTAT
TGATTTCCCG AT

>Vigan.02G031100.01
ATGCATCTCC CCCCACCTTC CCTTTGTATT TCCCTTTCCC TCATTAACTC ATTATCCTAT TCCTGTTCCT ATTATCACTC
AGAATTCCCA GAAGAAGCAG ATAGAAAGGA ACAGAAGCAT AAGCATAAGG AAGCAGAAGC AGATACAGCA ACAACAGCTA
TGGCTCGTGG AAAGATCCAG ATCAAGAGGA TAGAGAACAC CACCAACCGC CAAGTCACTT ACTCCAAACG ACGCAATGGC
CTTTTCAAGA AGGCCAACGA GCTCACCGTT CTCTGCGATG CCAAGGTTTC TATTATTATG TTCTCCAGCA CTGGCAAACT
CCACGAGTAC ATTAGCCCCT CCACCTCAAC AAAACACTTC TTTGATCAAT ACCAGATGAC CCTAGGAGTT GATCTCTGGA
ACTCTCACTA CGAGAATATG CAGGAGAACT TGAAGAAACT CAAAGAGGTC AATAAGAATC TTCGCAAGGA GATTAGGCAG
AGGATGGGAG ATTGCCTGAT CGATCTGAAT ATGGAAGATC TCAAGCTCCT GGAGGATGAA ATGGACAAGG CCGCCAAGAT
TGTTCGTGAG CGTAAGTATA AAGTGATAAC AAACCAGATT GACACCCAAA GGAAGAAGTT TAATAACGAG AAAGAAGTGC
ACAACAGACT CTTGCGTGAC TTGGATGCAA GAGCAGAAGA TCCACGTTTT GCATTGATAG AGAATGCAGG AGGAGAGTAC
GATTCTGTGA TCGGGTTCTC AAATTTAGGT CCACGCATGT TTGCCTTGAG CCTACAGCCA AGCCATCCTA GTGCTCATAG
CGGACCAACC TCTGATCTCA CCACTTACCC CTTACTTTTC TAG

>Vigan.02G031100.01
MHLPPPSLCI SLSLINSLSY SCSYYHSEFP EEADRKEQKH KHKEAEADTA TTAMARGKIQ IKRIENTTNR QVTYSKRRNG
LFKKANELTV LCDAKVSIIM FSSTGKLHEY ISPSTSTKHF FDQYQMTLGV DLWNSHYENM QENLKKLKEV NKNLRKEIRQ
RMGDCLIDLN MEDLKLLEDE MDKAAKIVRE RKYKVITNQI DTQRKKFNNE KEVHNRLLRD LDARAEDPRF ALIENAGGEY
DSVIGFSNLG PRMFALSLQP SHPSAHSGPT SDLTTYPLLF *