GBrowse Details

Vigan.02G032100.01

Basic Information:
Name: Vigan.02G032100.01
Multiple alignment
Variant Information
Position: Chr02:2372710..2378812 (+ strand)
Length: 6103
Functional Information:
Description: Similar to Uncharacterized protein. [I1K7N0, Glycine max]
GO: Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367)
Cellular Component: transcription factor TFIIF complex (GO:0005674)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: ATP binding (GO:0005524)
InterPro: Transcription initiation factor IIF, beta subunit (IPR003196)
Transcription Factor IIF, Rap30/Rap74, interaction (IPR011039)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:82.64,127.81,29.55,30.59,41.52,26.13,34.44,29.63
Arabidopsis thaliana homolog: AT1G75510.1
Automatic updates:
Name: NM_001254676 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription initiation factor IIF subunit beta-like (LOC100788473), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:2372710..2372870 (+ strand)
Length: 161
Type: five_prime_UTR
Position: Chr02:2372871..2373068 (+ strand)
Length: 198
Type: CDS
Position: Chr02:2374851..2374959 (+ strand)
Length: 109
Type: CDS
Position: Chr02:2377492..2377625 (+ strand)
Length: 134
Type: CDS
Position: Chr02:2377731..2377805 (+ strand)
Length: 75
Type: CDS
Position: Chr02:2378130..2378279 (+ strand)
Length: 150
Type: CDS
Position: Chr02:2378441..2378560 (+ strand)
Length: 120
Type: CDS
Position: Chr02:2378561..2378812 (+ strand)
Length: 252
Type: three_prime_UTR


>Vigan.02G032100.01
CAAGAAGAGG CTATGTAAAT GCTAAAGTTT CAATACGAGG GGTTGAGCTC GAGGTCAAAT ATAATTGACT TGGGGCGGTG
TCGGTTTCCA GACACGAGCG TGGTTTTCGT TGGTACCTGG AGGAAGCACA GTGAGAGAGA AAGAAAGAGA GAGAGAGAGA
GATGGATGAA GAGAATGGTT ACAGTGGGAG TAGCAGCTCC AATTTGGAGA CTTTGAAGGC GGAGAGATCT GTGTGGTTGA
TGAAATGCCC TTTGGTGGTG GCTAAGTCAT GGCAGACTCA TCCTCCTTCT CAACCCCTCG CTAAGGTCGT CCTCTCCCTC
GATCCTCTCC ACCCTGAAGA AGATCCCTCT GCAGTTCAGT TTACAATGGA GATGGCTGGC TCTGAAGCTG TGAATATGCC
AAAAACTTAT TCATTGAATA TGTTTAAGGA CTTTGTTCCT ATGTGTGTTT TCTCTGAGAC TAGCCAAGGT GGCAAGGTTG
CAATGGAAGG GAAAGTAGAA CATAAGTTTG ATATGAAGCC CCACGGAGAA AACATTGAAG AATATGGTAA ATTGTGCCGT
GAGAGGACAA ACAGATCTAT GATTAAAAAT CGACAAATAC AGGTTATTGA TAATGATCGA GGAGTTCTAA TGAGGCCAAT
GCCCGGAATG ATTGGTCTAG TTTCATCCAA TTCCAAGGAC AAGAAAAAGA CGCAGCCAAT TAAACAATCT GATACAAAGA
GAACAAGAAG AGATCGGGGA GAGCTGGAGG ATATAATGTT CAAGCTATTT GAAAGACAGC CTAACTGGGC CCTGAAACAG
CTTGTCCAAG AGACTGATCA ACCCGCCCAA TTCTTGAAAG AGATTCTGAA CGAACTGTGT GTTTATAATA AAAGAGGTGC
CAATCAAGGA ACTTATGAGC TGAAGCCTGA GTACAAGAAA TCTGTTGAAG ATACAAATGC TGAATGAGTG TTTTATTCTT
TACAGCCTAT TATTCTAACT CCATAAACGA AATTTAGTAT CTTTCTCTTA GCTGAGAAGA GTCAACATGT TTAGGGTAAA
TAGGGTGATC GAAGAAAGAA ACTTTGGAGG TCAAACAACA AGCAAACAGT GTATCTGAAG TGTGAAGGAT ACTTAGCTAA
TGTATTTTTT ATCGATAAAT TGTCAAAAGA GCAGTTCTGT ATACCTTCAA AAACGAATTT TAGTAACCGA AAAAATAAT

>Vigan.02G032100.01
ATGGATGAAG AGAATGGTTA CAGTGGGAGT AGCAGCTCCA ATTTGGAGAC TTTGAAGGCG GAGAGATCTG TGTGGTTGAT
GAAATGCCCT TTGGTGGTGG CTAAGTCATG GCAGACTCAT CCTCCTTCTC AACCCCTCGC TAAGGTCGTC CTCTCCCTCG
ATCCTCTCCA CCCTGAAGAA GATCCCTCTG CAGTTCAGTT TACAATGGAG ATGGCTGGCT CTGAAGCTGT GAATATGCCA
AAAACTTATT CATTGAATAT GTTTAAGGAC TTTGTTCCTA TGTGTGTTTT CTCTGAGACT AGCCAAGGTG GCAAGGTTGC
AATGGAAGGG AAAGTAGAAC ATAAGTTTGA TATGAAGCCC CACGGAGAAA ACATTGAAGA ATATGGTAAA TTGTGCCGTG
AGAGGACAAA CAGATCTATG ATTAAAAATC GACAAATACA GGTTATTGAT AATGATCGAG GAGTTCTAAT GAGGCCAATG
CCCGGAATGA TTGGTCTAGT TTCATCCAAT TCCAAGGACA AGAAAAAGAC GCAGCCAATT AAACAATCTG ATACAAAGAG
AACAAGAAGA GATCGGGGAG AGCTGGAGGA TATAATGTTC AAGCTATTTG AAAGACAGCC TAACTGGGCC CTGAAACAGC
TTGTCCAAGA GACTGATCAA CCCGCCCAAT TCTTGAAAGA GATTCTGAAC GAACTGTGTG TTTATAATAA AAGAGGTGCC
AATCAAGGAA CTTATGAGCT GAAGCCTGAG TACAAGAAAT CTGTTGAAGA TACAAATGCT GAATGA

>Vigan.02G032100.01
MDEENGYSGS SSSNLETLKA ERSVWLMKCP LVVAKSWQTH PPSQPLAKVV LSLDPLHPEE DPSAVQFTME MAGSEAVNMP
KTYSLNMFKD FVPMCVFSET SQGGKVAMEG KVEHKFDMKP HGENIEEYGK LCRERTNRSM IKNRQIQVID NDRGVLMRPM
PGMIGLVSSN SKDKKKTQPI KQSDTKRTRR DRGELEDIMF KLFERQPNWA LKQLVQETDQ PAQFLKEILN ELCVYNKRGA
NQGTYELKPE YKKSVEDTNA E*