GBrowse Details

Vigan.02G033100.01

Basic Information:
Name: Vigan.02G033100.01
Multiple alignment
Variant Information
Position: Chr02:2492168..2496544 (- strand)
Length: 4377
Functional Information:
Description: Similar to ribosomal RNA small subunit methyltransferase I-like isoform X4. [XP_004500975.1, Cicer arietinum]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: methyltransferase activity (GO:0008168)
InterPro: Tetrapyrrole methylase (IPR000878)
rRNA small subunit methyltransferase I (IPR008189)
Tetrapyrrole methylase, subdomain 2 (IPR014776)
Tetrapyrrole methylase, subdomain 1 (IPR014777)
SAM-dependent methyltransferase RsmI, conserved site (IPR018063)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.66,2.37,3.20,4.27,3.00,2.62,2.91,3.23
Arabidopsis thaliana homolog: AT1G45110.1
Automatic updates:
Name: NM_001255960 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribosomal RNA small subunit methyltransferase I-like (LOC100819709), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:2492168..2492955 (- strand)
Length: 788
Type: three_prime_UTR
Position: Chr02:2492956..2493057 (- strand)
Length: 102
Type: CDS
Position: Chr02:2493568..2493741 (- strand)
Length: 174
Type: CDS
Position: Chr02:2494666..2494708 (- strand)
Length: 43
Type: CDS
Position: Chr02:2495110..2495254 (- strand)
Length: 145
Type: CDS
Position: Chr02:2495335..2495443 (- strand)
Length: 109
Type: CDS
Position: Chr02:2495728..2495856 (- strand)
Length: 129
Type: CDS
Position: Chr02:2495930..2496026 (- strand)
Length: 97
Type: CDS
Position: Chr02:2496112..2496206 (- strand)
Length: 95
Type: CDS
Position: Chr02:2496292..2496510 (- strand)
Length: 219
Type: CDS
Position: Chr02:2496511..2496544 (- strand)
Length: 34
Type: five_prime_UTR


>Vigan.02G033100.01
TTGTAGAATC CATCGGGCCT AATTCAAAAC CAAAATGATC TGTCATCTGT GTGTTGCAAC GGTAGCGTTC TCAATTTTCC
GAAGAGGGAA AATGTTGATT CGACGATTAC CTTGGTCGGC GATTTCTGTC GCCACATTAT TTCCCCGTCG TTCCGGTGGT
TCAAATGGAC TTCGCATTCC CGTTCGCAAG CAACTTAACT CTTCTCCCTA CCCCTTCTGC TATAGCTCCG GCATCAATCT
CCCTCCACAA CCGGGTCACG AAACGGATAT TCGTCACTCG CAATCTCTGA AACCCGGTCT TTACCTTGTC GGAACACCGA
TCGGAAATCT CGAAGATATC ACTCTGAGGG CTCTTCGCGT GCTGAATTCA GCTGATGTTA TACTCTCGGA GGACACGAGG
CATTCGGGGA AGTTGCTTCA TCACTATAAC ATCAAAACGC CTCTCATGAG TTATCACAAA TACAACGAAT CGCAAAGGGA
ACAGGTTGTG CTGAGGAGGT TAAAGAAAGG TGATGTCGTG GCTCTTATAA GTGATGCTGG AATGCCAGGC ATCAGTGATC
CGGGTATGGA GTTGGCAAAA TTGTGTGTTA GTGAGAATAT CCTGGTTGTG CCAATCCCTG GTCCTTGTGC TTTGGTGTCG
GCACTTTCTG CCTCGGGCTT ACCTACTGAT GAATTTACAT TCGTTGGTTT TCTTCCTAAA CATTCTGGTT CTAGAAAAAA
AAGGCTTATG GTTTCAGCTG ATCAAACTAC TACACAGATA TTTTACGTTC CTCCTCACAA GCTTTCTCAG TTTCTTGACG
AGAGTTCTTC AATTTTTGGT GATGCAAGGA AATGTGTTAT TGCTCGGGAA ATGACTAAGT TACATGAAGA GTTTTGGCGT
GGTACACTTG GTGAAGCCAA GGAAGTATTT TCTATTCGTC AAGTGAAGGG AGAACTTACT ATATTGATTC AGGGGCAAGC
AAATTCTAAA GTTGAACCTC CATCAGACAT TGAGCTTGAG AGTGAACTTA GAGAACTGAT TTCAAGTGGC GAGAGTCTTT
CCATGGCTGT CAAGTTGGTC ACCAGCAAAA CATCAGTGAG TAGGAAAACT ATATATTCAC TGGCATTAAG GAAGTTTGGG
AAGCAACTCG AAGTGGAAGA TGATTAAAAT TAGCGTGGAT TATTTCTGCT GGTAAGTTTG ATATTTCTTT GCTGGTGTTT
CACTGGTTAC CGTATTTTAG TCGAGTTATT GTTCTATTAA AGCGTAAAAT TGTTTATTGT TAACAGCGAA AGAGATTCTC
TGCTCAAACT TTCAACCGGG ATGGTGATGG ATGGAATGAA ATGATCCATC CCTGCTGTTC TAGTTTTATT ACCGATCATA
TTAAGAATGG TTGGGCTGGT ATGCCAGTTT TCAACATTGT ATTCCTCTCT ACCAAGGTTC TGGTTTTCAT GACGCAACAA
AACTGATTGT AAATGTTTAC TCTGGGCAAG ATAGCTGTTG GGCTGGATCG GATCGTGCCG GCGAGGCAAA TGAATGGCAA
AGCTGAATTC CATATTGCTT TAGCATCTGG CGCCAATTTT ATCAGGATTC ATTTCAGCCC TTTCCTTTGG GCTTTAGCTG
AAGTAGTAAA ATATATGACA TTGTAAGATG TACAAAATTA AGACAAATAG TTTTTTTAAA ATATCATGCG TTGTGGATTT
TATAACAAAA TTAGGTATAT ACTTGTGCAG TGTTGCCAAT GAAGAATATA AGTAGTTCTA CCCTCCTCTT GACCCACATT
CACCACAAGA AAACCAATAA CACCCAGGTT TCTTCGTACT GGTATGTCAT TAATTCTCCA GTCCCACTCT TAGTTCATTT
TAACATAATG CCAAACCAAG TTTCTAGACG ACCTGCGAAA CCGCGTGGTT TGATAATATA TGTTTTTAGA AATCACGACC
CTAACTAATT GCGGA

>Vigan.02G033100.01
ATGATCTGTC ATCTGTGTGT TGCAACGGTA GCGTTCTCAA TTTTCCGAAG AGGGAAAATG TTGATTCGAC GATTACCTTG
GTCGGCGATT TCTGTCGCCA CATTATTTCC CCGTCGTTCC GGTGGTTCAA ATGGACTTCG CATTCCCGTT CGCAAGCAAC
TTAACTCTTC TCCCTACCCC TTCTGCTATA GCTCCGGCAT CAATCTCCCT CCACAACCGG GTCACGAAAC GGATATTCGT
CACTCGCAAT CTCTGAAACC CGGTCTTTAC CTTGTCGGAA CACCGATCGG AAATCTCGAA GATATCACTC TGAGGGCTCT
TCGCGTGCTG AATTCAGCTG ATGTTATACT CTCGGAGGAC ACGAGGCATT CGGGGAAGTT GCTTCATCAC TATAACATCA
AAACGCCTCT CATGAGTTAT CACAAATACA ACGAATCGCA AAGGGAACAG GTTGTGCTGA GGAGGTTAAA GAAAGGTGAT
GTCGTGGCTC TTATAAGTGA TGCTGGAATG CCAGGCATCA GTGATCCGGG TATGGAGTTG GCAAAATTGT GTGTTAGTGA
GAATATCCTG GTTGTGCCAA TCCCTGGTCC TTGTGCTTTG GTGTCGGCAC TTTCTGCCTC GGGCTTACCT ACTGATGAAT
TTACATTCGT TGGTTTTCTT CCTAAACATT CTGGTTCTAG AAAAAAAAGG CTTATGGTTT CAGCTGATCA AACTACTACA
CAGATATTTT ACGTTCCTCC TCACAAGCTT TCTCAGTTTC TTGACGAGAG TTCTTCAATT TTTGGTGATG CAAGGAAATG
TGTTATTGCT CGGGAAATGA CTAAGTTACA TGAAGAGTTT TGGCGTGGTA CACTTGGTGA AGCCAAGGAA GTATTTTCTA
TTCGTCAAGT GAAGGGAGAA CTTACTATAT TGATTCAGGG GCAAGCAAAT TCTAAAGTTG AACCTCCATC AGACATTGAG
CTTGAGAGTG AACTTAGAGA ACTGATTTCA AGTGGCGAGA GTCTTTCCAT GGCTGTCAAG TTGGTCACCA GCAAAACATC
AGTGAGTAGG AAAACTATAT ATTCACTGGC ATTAAGGAAG TTTGGGAAGC AACTCGAAGT GGAAGATGAT TAA

>Vigan.02G033100.01
MICHLCVATV AFSIFRRGKM LIRRLPWSAI SVATLFPRRS GGSNGLRIPV RKQLNSSPYP FCYSSGINLP PQPGHETDIR
HSQSLKPGLY LVGTPIGNLE DITLRALRVL NSADVILSED TRHSGKLLHH YNIKTPLMSY HKYNESQREQ VVLRRLKKGD
VVALISDAGM PGISDPGMEL AKLCVSENIL VVPIPGPCAL VSALSASGLP TDEFTFVGFL PKHSGSRKKR LMVSADQTTT
QIFYVPPHKL SQFLDESSSI FGDARKCVIA REMTKLHEEF WRGTLGEAKE VFSIRQVKGE LTILIQGQAN SKVEPPSDIE
LESELRELIS SGESLSMAVK LVTSKTSVSR KTIYSLALRK FGKQLEVEDD *