GBrowse Details

Vigan.02G034700.01

Basic Information:
Name: Vigan.02G034700.01
Multiple alignment
Variant Information
Position: Chr02:2609929..2613617 (+ strand)
Length: 3689
Functional Information:
Description: Similar to Uncharacterized protein. [I1JT95, Glycine max]
InterPro: Bacterial transferase hexapeptide repeat (IPR001451)
Trimeric LpxA-like (IPR011004)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:26.82,22.72,22.48,13.38,33.68,21.30,21.67,15.55
Arabidopsis thaliana homolog: AT1G19580.1
Automatic updates:
Name: BT097678 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16E20 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254164 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100805278 (LOC100805278), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:2609929..2610038 (+ strand)
Length: 110
Type: five_prime_UTR
Position: Chr02:2610039..2610153 (+ strand)
Length: 115
Type: CDS
Position: Chr02:2610330..2610473 (+ strand)
Length: 144
Type: CDS
Position: Chr02:2610658..2610783 (+ strand)
Length: 126
Type: CDS
Position: Chr02:2610861..2611012 (+ strand)
Length: 152
Type: CDS
Position: Chr02:2612962..2613246 (+ strand)
Length: 285
Type: CDS
Position: Chr02:2613247..2613617 (+ strand)
Length: 371
Type: three_prime_UTR


>Vigan.02G034700.01
TTTTTTGTTA TAGTGATGGA AACCCCAAAA TACCCTCTCC ATGAAAGAGG GATACTCTAC TCTTCCATTT TGGTTGGGAG
TGGAAGCGTA AGCAGCGAGC AGTAGTGGAA ATGGGAACCC TTGGGAGAGC GATATACAGC GTTGGTTTCT GGATTCGCGA
GACTGGACAG GCCATCGATC GTCTCGGTTC CCGCCTTCAG GGCGGTTACT TTTTCCAAGA GCAGCTGTCT AGGCATCGAA
CTCTGATGAA CATATTTGAT AAGGCTCCTG TTGTTGATAA GGATGTATTT GTTGCGCCAA GTGCCTCCGT CATTGGAGAC
GTTCATGTTG GAAGAGGATC ATCCATTTGG TATGGATGTG TCTTGAGAGG TGATGTTAAC AGCATCAGAG TTGGAAGTGG
AACTAACATA CAGGATAACT CTCTGGTGCA TGTTGCAAAG TCAAATTTAA GTGGGAAGGT CTTGCCTACA GTTATTGGGG
ATAATGTTAC TGTGGGTCAT AGTGCTGTTT TACACGGTTG TACTGTTGAG GACGAGGCTT TTGTTGGTAT GGGTGCCGTA
TTACTTGATG GAGTAGTTGT TGAGAAAAAT GCCATGGTTG CTGCTGGAGC CCTTGTGAGG CAGAATACAA GGATACCTTC
TGGCGAGGTA TGGGCAGGCA ATCCTGCAAA GTTCCTGAGA AAGCTAAGTA ATGAGGAGAT AACATTCATC TCACAGTCAG
CCATCAATTA TACTAACCTT GCACAGGTCC ATGCTGCTGA GAATTCGAAG TCGTATGATG AAATTGAGTT TGAGAAGGTG
TTGCGAAAGA AGTATGCTCG TAAAGATGAG GAGTATGACT CTATGCTGGG TGTTGTTCGC GAGATCCCAC CAGAGCTTAT
TCTTCCCGAT AATGTCTTAC CTGATAAAGC AGAAAAGGCT CTTCAAAAAT GAGATATTTT AAAGCATTGT CTTCAATTCT
AATATTGAAT GACAATGGGA CTTTTTTGCA TTTACAAATT CATGGAAGAG GGATTTTTTT TTCATTCCCA ATAATAGCAG
ACATTGTCTG CGCTAGAATC AATCGTGCCT CCTTACGATC CAGGAAGCAG TTATTCCTTA ATATTTTGAA TTCTGTTCAC
TAATTTGGTA AAGGCAAATG CCATGTAGAA TTATGTATGC CGATCTTAGT GTTTGTTGTA TCCAGTGCAA GTGATTTCAC
ATTTTTTTAT CTTGTTTATC TTTATGTTGA AGACATTCTT TAGTGCTCGT TGACATGTTT TATTGACGAG GACACCTACG
ACCGTGTTTA TCTTCAGTAT GGT

>Vigan.02G034700.01
ATGGGAACCC TTGGGAGAGC GATATACAGC GTTGGTTTCT GGATTCGCGA GACTGGACAG GCCATCGATC GTCTCGGTTC
CCGCCTTCAG GGCGGTTACT TTTTCCAAGA GCAGCTGTCT AGGCATCGAA CTCTGATGAA CATATTTGAT AAGGCTCCTG
TTGTTGATAA GGATGTATTT GTTGCGCCAA GTGCCTCCGT CATTGGAGAC GTTCATGTTG GAAGAGGATC ATCCATTTGG
TATGGATGTG TCTTGAGAGG TGATGTTAAC AGCATCAGAG TTGGAAGTGG AACTAACATA CAGGATAACT CTCTGGTGCA
TGTTGCAAAG TCAAATTTAA GTGGGAAGGT CTTGCCTACA GTTATTGGGG ATAATGTTAC TGTGGGTCAT AGTGCTGTTT
TACACGGTTG TACTGTTGAG GACGAGGCTT TTGTTGGTAT GGGTGCCGTA TTACTTGATG GAGTAGTTGT TGAGAAAAAT
GCCATGGTTG CTGCTGGAGC CCTTGTGAGG CAGAATACAA GGATACCTTC TGGCGAGGTA TGGGCAGGCA ATCCTGCAAA
GTTCCTGAGA AAGCTAAGTA ATGAGGAGAT AACATTCATC TCACAGTCAG CCATCAATTA TACTAACCTT GCACAGGTCC
ATGCTGCTGA GAATTCGAAG TCGTATGATG AAATTGAGTT TGAGAAGGTG TTGCGAAAGA AGTATGCTCG TAAAGATGAG
GAGTATGACT CTATGCTGGG TGTTGTTCGC GAGATCCCAC CAGAGCTTAT TCTTCCCGAT AATGTCTTAC CTGATAAAGC
AGAAAAGGCT CTTCAAAAAT GA

>Vigan.02G034700.01
MGTLGRAIYS VGFWIRETGQ AIDRLGSRLQ GGYFFQEQLS RHRTLMNIFD KAPVVDKDVF VAPSASVIGD VHVGRGSSIW
YGCVLRGDVN SIRVGSGTNI QDNSLVHVAK SNLSGKVLPT VIGDNVTVGH SAVLHGCTVE DEAFVGMGAV LLDGVVVEKN
AMVAAGALVR QNTRIPSGEV WAGNPAKFLR KLSNEEITFI SQSAINYTNL AQVHAAENSK SYDEIEFEKV LRKKYARKDE
EYDSMLGVVR EIPPELILPD NVLPDKAEKA LQK*