GBrowse Details

Vigan.02G044800.01

Basic Information:
Name: Vigan.02G044800.01
Multiple alignment
Variant Information
Position: Chr02:3266949..3271443 (+ strand)
Length: 4495
Functional Information:
Description: Similar to Defective chloroplast and leaves protein. [Q00M77, Glycine max]
GO: Biological Process: amine metabolic process (GO:0009308)
Molecular Function: copper ion binding (GO:0005507)
Molecular Function: quinone binding (GO:0048038)
InterPro: Copper amine oxidase, N2/N3-terminal (IPR015801)
Protein of unknown function DUF3223 (IPR021602)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.29,9.65,11.72,37.49,8.42,10.96,14.45,11.39
Arabidopsis thaliana homolog: AT1G45230.1
Automatic updates:
Name: NM_001248478 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306718 (LOC100306718), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:3266949..3267124 (+ strand)
Length: 176
Type: five_prime_UTR
Position: Chr02:3267125..3267462 (+ strand)
Length: 338
Type: CDS
Position: Chr02:3269205..3269319 (+ strand)
Length: 115
Type: CDS
Position: Chr02:3270938..3271114 (+ strand)
Length: 177
Type: CDS
Position: Chr02:3271115..3271443 (+ strand)
Length: 329
Type: three_prime_UTR


>Vigan.02G044800.01
AATAGATTTA AATGTAACCC GTTGGGGGAA GAAAATGGGT AGAGGAGAGG GAGCTGAAGC TGCTTCTTTA TCCTAAACTT
GAGTTTCCCG CAGAGCTGAG AGAGCGAGTG ATGAATAATA GAATACGATG TTAGATGGAT AATTGGGTGA GCTGAGTGAT
AAATTCGACT TCAACCATGG CTTTGCCTTC TTTACTACCC AAAACGGCAC CGCATCTTCT TCCCCTCACA AACCCCTTCT
CTTCCTCTTC CTCTCCCTCT ACTCTCATCT TACCTTTCCG CTTCCACTTT TTCTCTCACC TTCCTCCTCT CTCTCTCCTC
AAAGCCGCTT CCTCCGCCGG CGATAGTTTG CGCAGCAAGC CCCTCATGTC CCAGAGAAGG GGGATTTTGG AGGAACACGG
CAGCCAAGCC TTTGAGGAAG ACGACGACGA CAAATGGATT GACTGGGAGG ACCAGATTTT GGAGGACACC GTTCCTCTCG
TTGGTTTCGT CAGGATGATT CTCCATTCTG GACAATATGA AAGTGGAGAT AGACTAAGTG AAGAGCATGA GAAAACCATT
ATTGAGAAGC TGCTTCCCTT TCATCCAGAA TTTGAGCAAA AGATCGGATG TGGAGTTGAT TATATCACGA TTGGATATCA
TCCTGATTTT GAACGCTCAA GGTGTTTGTT CATTGTTCGA CAAGATGGTC AAGTGGTTGA TTTTTCATAT TGGAAATGTA
TAAAGGGCTT GATCAGAAAG AACTATCCTT TATATGCAGA CACTTTCATT CTCAGACATT TCAGGAAGAA AAGTCGTAAT
TTGTGAAGTT AAAGCTGTAT TATGCTGGTT GGACCATTTT ATATTAGCGT TCGCTTCTTT TTTAAATCTT TTTTTTTTTG
TTATTTTCGT GTTTGGTAGC ATGGTATTTT AAAGGTCAGA GAAAAATGGT GCACAATTTT TTGGAGTTCT GAAGAGTGTT
TGATATTTAG CGACTCACTA CAAATGATTG CCACTCAATG CCGGAATTTG TTCCCATTTT ATTGACAATA TTCGTAGTGA
TATAAAAATA TGGGAATGTA GATGTAGATG ATATTGTACC TTTCAGTGCA TATATTTTTT AAATTTGTAG AATTGAAGTT
CATTTTATAC CGTTT

>Vigan.02G044800.01
ATGGCTTTGC CTTCTTTACT ACCCAAAACG GCACCGCATC TTCTTCCCCT CACAAACCCC TTCTCTTCCT CTTCCTCTCC
CTCTACTCTC ATCTTACCTT TCCGCTTCCA CTTTTTCTCT CACCTTCCTC CTCTCTCTCT CCTCAAAGCC GCTTCCTCCG
CCGGCGATAG TTTGCGCAGC AAGCCCCTCA TGTCCCAGAG AAGGGGGATT TTGGAGGAAC ACGGCAGCCA AGCCTTTGAG
GAAGACGACG ACGACAAATG GATTGACTGG GAGGACCAGA TTTTGGAGGA CACCGTTCCT CTCGTTGGTT TCGTCAGGAT
GATTCTCCAT TCTGGACAAT ATGAAAGTGG AGATAGACTA AGTGAAGAGC ATGAGAAAAC CATTATTGAG AAGCTGCTTC
CCTTTCATCC AGAATTTGAG CAAAAGATCG GATGTGGAGT TGATTATATC ACGATTGGAT ATCATCCTGA TTTTGAACGC
TCAAGGTGTT TGTTCATTGT TCGACAAGAT GGTCAAGTGG TTGATTTTTC ATATTGGAAA TGTATAAAGG GCTTGATCAG
AAAGAACTAT CCTTTATATG CAGACACTTT CATTCTCAGA CATTTCAGGA AGAAAAGTCG TAATTTGTGA 

>Vigan.02G044800.01
MALPSLLPKT APHLLPLTNP FSSSSSPSTL ILPFRFHFFS HLPPLSLLKA ASSAGDSLRS KPLMSQRRGI LEEHGSQAFE
EDDDDKWIDW EDQILEDTVP LVGFVRMILH SGQYESGDRL SEEHEKTIIE KLLPFHPEFE QKIGCGVDYI TIGYHPDFER
SRCLFIVRQD GQVVDFSYWK CIKGLIRKNY PLYADTFILR HFRKKSRNL*