GBrowse Details

Vigan.02G050600.01

Basic Information:
Name: Vigan.02G050600.01
Multiple alignment
Variant Information
Position: Chr02:3809550..3813765 (+ strand)
Length: 4216
Functional Information:
Description: Similar to Uncharacterized protein. [I1JTP4, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Natural resistance-associated macrophage like (IPR001046)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.55,6.29,3.82,3.08,19.83,6.28,4.55,3.93
Arabidopsis thaliana homolog: AT1G47240.1, AT2G23150.1, AT4G18790.1, AT5G67330.1
Automatic updates:
Name: NM_001357779 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max metal transporter Nramp3a (NRAMP3A), mRNA.
PubMed ID: 28868061 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:3809550..3809904 (+ strand)
Length: 355
Type: five_prime_UTR
Position: Chr02:3809905..3810473 (+ strand)
Length: 569
Type: CDS
Position: Chr02:3810972..3811108 (+ strand)
Length: 137
Type: CDS
Position: Chr02:3811268..3811920 (+ strand)
Length: 653
Type: CDS
Position: Chr02:3812806..3813027 (+ strand)
Length: 222
Type: CDS
Position: Chr02:3813028..3813765 (+ strand)
Length: 738
Type: three_prime_UTR


>Vigan.02G050600.01
CTTGAAGTGT TGTATAAATT GTAGTAATAA CCGCGCACCT GACAAGATAA ACAAACAAGA ATGATGGTGA AATAAATGAT
CGAACGGCCA CAGACGCAGA CGATGCAATA GTTTCTCTAA GGAAATGACG AAAATAAGCC CTGTAATTGT GACGTGTCGC
TAGATGTTAG TTTAAACCGA GCGATTGCAT CTAGAACGGA GTAGAGAGTA ACTAGCTGCA GAACACATTG GCTAGGCCAG
ATGGTAGATA GATCCGTATA AATAGGTGCG TTGAGTTTGC ACACGTAGCA GGTAGCAGGC CACCGCGAAC TGGCTTCCTC
CACCGTCCGC GCACGCCGGA AAGTTTGATC AGAAAATGAG TGCTCCGCCG CGAGAAGAGG GGTCGAAAGA AGAGGAGAAA
GACGAGGAGG CGAACCGGCT TCTAGAGGAA GCAGGAGCGG TATCGTCATC GGAAGAAGAT GTCGCATACG AAGCGGGGGA
GAAGATCCTG GTGGCGGATT TCGATTTTGA CACAGTGGAC GATGCGACGG TTCCTCCTTT CTCATGGAAG AAGCTGTGGC
TCTTCACTGG GCCTGGGTTC TTGATGAGCA TAGCTTTTTT GGATCCGGGG AATCTCGAGG GGGATCTCCA GTCTGGGGCC
ATCGCGGGCT ACTCGCTCCT CTGGCTCTTG ATGTGGGCCA CCATCATGGG CCTCTTGATC CAGCTTCTGT CCGCCAGAGT
CGGGGTCGCC ACGGGCCGCC ACCTCGCTGA GCTCTGTCGG GATGAGTATC CCCATTGGGC CCGCCTTGTG CTCTGGTTCA
TGGCCGAGCT GGCCCTGATT GGCGCCGACA TTCAAGAGGT CATTGGAAGT GCCATCGCCA TCCAAATTCT TAGCCGAGGC
GTCCTCCCTC TCTGGGTTGG AGTTCTAATC ACTGCTTCCG ACTGCTTTTT CTTTCTATTT CTTGAGAACT ATGGTGTGAG
GAAGTTGGAA GCTGCTTTTG CAGTTCTCAT TTCTATTATG GGTCTTTCTT TTGCCTGGAT GTTTGCTGAT GCAAGACCTA
ATAGACAAGA GCTTTTAATG GGTATTTTGG TTCCGAGACT AAGCTCAAAA ACAATTCGTC AAGCTGTGGG TGTTGTGGGT
TGTGTCATTA TGCCTCACAA TGTATTCCTG CATTCTGCTT TGGTTCAATC AAGGAAGGTT GATCCTAATA AGAAAGGTCG
GGTACAGGAG GCTCTCAACT ACTATTCAAT CGAGTCATCA GCTGCACTTT CAGTCTCCTT CTTGATCAAT CTATTTGTCA
CAACAGTTTT TGCTAAGGGT TTTTATGGAA CAAAGCAGGC AAAAGACATA GGACTCGTCA ATGCAGGGCA ATATCTTGAA
GAAAAGTATG GAGGAGGAGT TTTCCCTATT CTTTATATAT GGGGAATTGG GTTATTGGCA GCTGGCCAGA GTAGCACCAT
CACTGGCACA TACGCTGGGC AGTTCATAAT GGGGGGTTTC CTCAACCTTC GTTTAAAGAA ATGGATGAGA GCATTGATCA
CTCGAAGTTT TGCAATTGTG CCAACTATAA TTGTAGCTAT AGTTTTTAAT ACATCAGAAG CCTCCTTGGA CATTTTGAAT
GAATGGCTCA ATGTGCTTCA GTCCATGCAA ATTCCCTTTG CTTTGATTCC CCTCCTCACA TTGGTCTCCA AAGAGCAGCT
CATGGGAACC TTTAGAGTTG GACCTGTTCT TGAGAGAGTA GCATGGACTG TTGCTGGACT GATAATAGTG ATTAATGGGT
ATCTCTTGTT AGATTTCTTC ATTTCTGAAG TGAATGGCGT CTTGCTTGGT CTTTTAGCCT GCTCCTGCAC GACAGCCTAT
ATTGCGTTCA TAGTATATTT GGTTTCACAG AGCGGTATTC TTCCTTCTGC ATGGGTTAAT CGTCTTCCCA AGGGATTTTC
TTCAACTGGG AATTAACTCA ACAAAATTCA TCCTTTGATG AAAAATCTGG AAATAGTACG GCAAACTTCT GCTAGACAAT
TTTGCATGAG TTTTGCTTCA TAAACCATAG AGTTTATAGA GTTTCTCTAA CCATGCAACC TGAATTAAAT TGAATACAAG
GTCAGGTAGG GGAAACCACC TAGTTTTAAC TGCACTTCAA TTTTGCAATA GCCTTACAAA GTTTACCTTC CATGTGCACC
AAGATGGATA TACCTTTCGG ATGGAAGACA TGGAGAGAGC ATCATTACAA CATGCAGGAT AGATTATCGA TTTACCGCTC
GGCATACCTG CCATTCTATT TCTAACAAGT TGTGAATTGC TGCATTATTC TTTGATGTAT ACAGTTTGTA TTTAACTTGG
CACTGGCACA TGTTCCGTTC ATGAAGGAAC ACGAGATACA TTCTACTTGC TGAGGGCAGA AAGGTAATTA AGACAGCAGA
CATAAGTTGT CCGGAATACC CAATAGTAAA ATCTGGAGTA CATTTATTTT ATATTATCTT TATGTTTTCT AGCTAGTTAT
GATCTCACCT TACTTGAAGG TGCTACTCAG TTGCTGAGCA ACACACTGGC AATAACAAAC TGTTAGGGCC TTAATCTGAT
TAGGCTGTAG TTATTGGGTT ACTTTTTTGT TGAAAAGTAA AAGGTGTCAA ACCAATTTGA TGAATTACTT GTTGAATTAT
ATGTAAAAAA ACTCATTTCT CTTATTTCTA TCCA

>Vigan.02G050600.01
ATGAGTGCTC CGCCGCGAGA AGAGGGGTCG AAAGAAGAGG AGAAAGACGA GGAGGCGAAC CGGCTTCTAG AGGAAGCAGG
AGCGGTATCG TCATCGGAAG AAGATGTCGC ATACGAAGCG GGGGAGAAGA TCCTGGTGGC GGATTTCGAT TTTGACACAG
TGGACGATGC GACGGTTCCT CCTTTCTCAT GGAAGAAGCT GTGGCTCTTC ACTGGGCCTG GGTTCTTGAT GAGCATAGCT
TTTTTGGATC CGGGGAATCT CGAGGGGGAT CTCCAGTCTG GGGCCATCGC GGGCTACTCG CTCCTCTGGC TCTTGATGTG
GGCCACCATC ATGGGCCTCT TGATCCAGCT TCTGTCCGCC AGAGTCGGGG TCGCCACGGG CCGCCACCTC GCTGAGCTCT
GTCGGGATGA GTATCCCCAT TGGGCCCGCC TTGTGCTCTG GTTCATGGCC GAGCTGGCCC TGATTGGCGC CGACATTCAA
GAGGTCATTG GAAGTGCCAT CGCCATCCAA ATTCTTAGCC GAGGCGTCCT CCCTCTCTGG GTTGGAGTTC TAATCACTGC
TTCCGACTGC TTTTTCTTTC TATTTCTTGA GAACTATGGT GTGAGGAAGT TGGAAGCTGC TTTTGCAGTT CTCATTTCTA
TTATGGGTCT TTCTTTTGCC TGGATGTTTG CTGATGCAAG ACCTAATAGA CAAGAGCTTT TAATGGGTAT TTTGGTTCCG
AGACTAAGCT CAAAAACAAT TCGTCAAGCT GTGGGTGTTG TGGGTTGTGT CATTATGCCT CACAATGTAT TCCTGCATTC
TGCTTTGGTT CAATCAAGGA AGGTTGATCC TAATAAGAAA GGTCGGGTAC AGGAGGCTCT CAACTACTAT TCAATCGAGT
CATCAGCTGC ACTTTCAGTC TCCTTCTTGA TCAATCTATT TGTCACAACA GTTTTTGCTA AGGGTTTTTA TGGAACAAAG
CAGGCAAAAG ACATAGGACT CGTCAATGCA GGGCAATATC TTGAAGAAAA GTATGGAGGA GGAGTTTTCC CTATTCTTTA
TATATGGGGA ATTGGGTTAT TGGCAGCTGG CCAGAGTAGC ACCATCACTG GCACATACGC TGGGCAGTTC ATAATGGGGG
GTTTCCTCAA CCTTCGTTTA AAGAAATGGA TGAGAGCATT GATCACTCGA AGTTTTGCAA TTGTGCCAAC TATAATTGTA
GCTATAGTTT TTAATACATC AGAAGCCTCC TTGGACATTT TGAATGAATG GCTCAATGTG CTTCAGTCCA TGCAAATTCC
CTTTGCTTTG ATTCCCCTCC TCACATTGGT CTCCAAAGAG CAGCTCATGG GAACCTTTAG AGTTGGACCT GTTCTTGAGA
GAGTAGCATG GACTGTTGCT GGACTGATAA TAGTGATTAA TGGGTATCTC TTGTTAGATT TCTTCATTTC TGAAGTGAAT
GGCGTCTTGC TTGGTCTTTT AGCCTGCTCC TGCACGACAG CCTATATTGC GTTCATAGTA TATTTGGTTT CACAGAGCGG
TATTCTTCCT TCTGCATGGG TTAATCGTCT TCCCAAGGGA TTTTCTTCAA CTGGGAATTA A

>Vigan.02G050600.01
MSAPPREEGS KEEEKDEEAN RLLEEAGAVS SSEEDVAYEA GEKILVADFD FDTVDDATVP PFSWKKLWLF TGPGFLMSIA
FLDPGNLEGD LQSGAIAGYS LLWLLMWATI MGLLIQLLSA RVGVATGRHL AELCRDEYPH WARLVLWFMA ELALIGADIQ
EVIGSAIAIQ ILSRGVLPLW VGVLITASDC FFFLFLENYG VRKLEAAFAV LISIMGLSFA WMFADARPNR QELLMGILVP
RLSSKTIRQA VGVVGCVIMP HNVFLHSALV QSRKVDPNKK GRVQEALNYY SIESSAALSV SFLINLFVTT VFAKGFYGTK
QAKDIGLVNA GQYLEEKYGG GVFPILYIWG IGLLAAGQSS TITGTYAGQF IMGGFLNLRL KKWMRALITR SFAIVPTIIV
AIVFNTSEAS LDILNEWLNV LQSMQIPFAL IPLLTLVSKE QLMGTFRVGP VLERVAWTVA GLIIVINGYL LLDFFISEVN
GVLLGLLACS CTTAYIAFIV YLVSQSGILP SAWVNRLPKG FSSTGN*