VIGGS:GBrowse

Vigan.02G051200.01

Basic Information:

Name:	Vigan.02G051200.01 Multiple alignment Variant Information
Position:	Chr02:3851132..3854720 (+ strand)
Length:	3589

Functional Information:

Description:	Similar to cytochrome b5-like. [XP_004501534.1, Cicer arietinum]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:40.24,39.94,31.77,33.24,41.60,38.06,32.95,33.55

Automatic updates:

Name:	NM_001252800 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100816659 (LOC100816659), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:3851132..3851300 (+ strand)
Length:	169
Type:	five_prime_UTR

Position:	Chr02:3851301..3851340 (+ strand)
Length:	40
Type:	CDS

Position:	Chr02:3851419..3851463 (+ strand)
Length:	45
Type:	CDS

Position:	Chr02:3853307..3853339 (+ strand)
Length:	33
Type:	CDS

Position:	Chr02:3854225..3854394 (+ strand)
Length:	170
Type:	CDS

Position:	Chr02:3854395..3854720 (+ strand)
Length:	326
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G051200.01
CGTACGTCTA GAAATTAAGG GGTACAGGAA GAAAAAGCCT GAAATAAAAA GGCTTCTCCA CTGAGGAATA GTTAATTGCA
TTTTGCTCTG ATTGGTTTGA TTAGGCCCTC CATAATGCCT TTTCCCTTTA CTCTGTATAC TCACTGGTAA AGAAAATAAG
AAATCAGAAA TGGTTATCAC AACCTTCAAC GGAGCTGGCG TTGGATTTGG TTTCGGCGTA GGTTGCGGTT TCGGTGTAGG
ATGGGGTTTC GGAGGTATGC CATTGAACTT ATTGGGTCTT GGTGCAGGTG GAGGCTGTGG CGTTGGAGTA GGACTTGGTT
GGGGGTTTGG TACTGCCTTT GGTAGCAAGT ATCGGTCCTC ACGGGTCACA TTTCAAGGAG TGGAATTTGA TAGCAAGGAG
ACAGTTAACA GCAAGGAGTT CTCAAAGCCC AGTACAGAAG CTGGAGGTGC ACGGTAGTGT TTCTACTTTG TAAATTCCTG
GTCGGCCTAT GGAGATAAAT TGAATTTGTA ATAACAAGAA CATGTGGAGA TTGCGACTTC CTTTCAAATT GTAGCAGTTT
TTGGATAATG GCTGCCCCTA ATGGTAATGT GATATGTACG CATTTTTTAT TTCAAGAAAA CTAATGGTGT GTTTATAGTC
ATGGAGTGAA TATAGAGCTT TTGGTATTAG TACTGAATGT GTACGCATTA GATGAGTTTG TTTGGTGGCA TGGAGATTGG
AAGGAGAGAA GTAAAAAGTG AATCTGAATA GTATTTTTAT ACATTATTTT TTATTTGTTT CTA

[show][hide][copy]CDS

>Vigan.02G051200.01
ATGGTTATCA CAACCTTCAA CGGAGCTGGC GTTGGATTTG GTTTCGGCGT AGGTTGCGGT TTCGGTGTAG GATGGGGTTT
CGGAGGTATG CCATTGAACT TATTGGGTCT TGGTGCAGGT GGAGGCTGTG GCGTTGGAGT AGGACTTGGT TGGGGGTTTG
GTACTGCCTT TGGTAGCAAG TATCGGTCCT CACGGGTCAC ATTTCAAGGA GTGGAATTTG ATAGCAAGGA GACAGTTAAC
AGCAAGGAGT TCTCAAAGCC CAGTACAGAA GCTGGAGGTG CACGGTAG

[show][hide][copy]PROTEIN

>Vigan.02G051200.01
MVITTFNGAG VGFGFGVGCG FGVGWGFGGM PLNLLGLGAG GGCGVGVGLG WGFGTAFGSK YRSSRVTFQG VEFDSKETVN
SKEFSKPSTE AGGAR*