GBrowse Details

Vigan.02G053200.01

Basic Information:
Name: Vigan.02G053200.01
Multiple alignment
Variant Information
Position: Chr02:3999971..4002317 (+ strand)
Length: 2347
Functional Information:
Description: Similar to pollen-specific protein SF3-like. [XP_004498991.1, Cicer arietinum]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, LIM-type (IPR001781)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.17,1.87,30.69,21.30,1.94,84.95,12.87,87.07
Arabidopsis thaliana homolog: AT1G10200.1
Automatic updates:
Name: NM_001248829 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305720 (LOC100305720), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251651 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499957 (LOC100499957), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:3999971..4000234 (+ strand)
Length: 264
Type: five_prime_UTR
Position: Chr02:4000235..4000369 (+ strand)
Length: 135
Type: CDS
Position: Chr02:4000909..4001005 (+ strand)
Length: 97
Type: CDS
Position: Chr02:4001095..4001135 (+ strand)
Length: 41
Type: CDS
Position: Chr02:4001376..4001465 (+ strand)
Length: 90
Type: CDS
Position: Chr02:4001642..4001869 (+ strand)
Length: 228
Type: CDS
Position: Chr02:4001870..4002317 (+ strand)
Length: 448
Type: three_prime_UTR


>Vigan.02G053200.01
CTTAACAGTG GAAGACATTA AAAATGTGTA AGAGAAAATG TGAGTTAGGT GGTTAAAATA TTAGACAAAA TGATTGTCAA
TGACAGTATA TTTGTTGGGG TGTCTGCTTT TGTCTCCTGC CTCCCACATT TCACCACCCC CTTTTGCCTT ATCTCCTCTT
TTTCATCGTT TTGCTCTTCC TCTTACCAAG AAAAATCTAC TTAAGGCGCA CAGAGGGATC ATATAGCTCT GTTGCACCTT
GCTAAGGGAA GAGAATTCGG AAATATGGCA TTTGCAGGAA CAACTCAGAA ATGCATGGCT TGTGACAAAA CAGTTTATCT
GGTTGATAAG TTAACTGCGG ATAATCGAGT GTTCCACAAG GCTTGCTTCA GATGCCACCA CTGCAAAGGA ACACTCAAGC
TTAGCAACTA TAACTCTTTC GAGGGAGTTC TTTACTGCAA GCCACACTTC GATCAACTGT TCAAAAGAAC TGGTAGTCTT
GACAAAAGCT TCGAAGGGAC ACCAAAAATT GCTAAACCAG ACAAAACTGG CGAAGAGAAA CCTGCAGCAA CCAAGGTCTT
GAATATGTTT GGTGGAACCA GAGACAAATG TGCTGGTTGT CAGAAAACAG TGTATCCCAC TGAAAAGGTG ACGGTGAATG
GAACTCCTTA TCACAAGAGT TGTTTCAAAT GCACTCATGG AGGGTGTGTT ATTAGTCCCT CTAATTACAT TGCACACGAT
GGAAAACTCT ACTGCAAACA CCATCACATT CAACTGATCA AGGAGAAGGG AAATTTAAGC CAGCTTGAAG GTGACAATGA
GAAGAGTACA ATTCAAGAGA AAACCAACGG GGAAGTAGTT GCAGCTGAGA CATGAAATGA AATGCTGGAC TTATGAGAAA
GTCTAAGAAT GAATATTCCC TTCCTCAAGT TCCATATTTA TGTATATCAT GTGTTTTCTG CTATATCTCT CTCATGCTTT
ACCATCAGTA CTGAGTCCAG AATCTTGAAA AATATGATAT TCCCTTTATT GTGGGTGGGG TGTGTGGAAA TCCATCATTT
TGTTTCTGTT GTGAGTTATG GATACAAAAA TGAGACATTA ATGGCATTTG ATTCTGAATG TTGTTCAGAA GCCAATGCTA
CTGAATTTCT TTAAACTTTC CCTATGCATT CATATTGATT CAGAAGCCAC TCCTACTCAT TTTTTTCATT TTTTTTTCCA
CCTCTCAAGA CCTTCCTCCA CATTTAAGAA ACAAAGAAAT TGAAACTCTA GTTTATCGTT GAGTGTAGTT AAGAAAACAA
AATTAAGATT TTAAATTTTT TCA

>Vigan.02G053200.01
ATGGCATTTG CAGGAACAAC TCAGAAATGC ATGGCTTGTG ACAAAACAGT TTATCTGGTT GATAAGTTAA CTGCGGATAA
TCGAGTGTTC CACAAGGCTT GCTTCAGATG CCACCACTGC AAAGGAACAC TCAAGCTTAG CAACTATAAC TCTTTCGAGG
GAGTTCTTTA CTGCAAGCCA CACTTCGATC AACTGTTCAA AAGAACTGGT AGTCTTGACA AAAGCTTCGA AGGGACACCA
AAAATTGCTA AACCAGACAA AACTGGCGAA GAGAAACCTG CAGCAACCAA GGTCTTGAAT ATGTTTGGTG GAACCAGAGA
CAAATGTGCT GGTTGTCAGA AAACAGTGTA TCCCACTGAA AAGGTGACGG TGAATGGAAC TCCTTATCAC AAGAGTTGTT
TCAAATGCAC TCATGGAGGG TGTGTTATTA GTCCCTCTAA TTACATTGCA CACGATGGAA AACTCTACTG CAAACACCAT
CACATTCAAC TGATCAAGGA GAAGGGAAAT TTAAGCCAGC TTGAAGGTGA CAATGAGAAG AGTACAATTC AAGAGAAAAC
CAACGGGGAA GTAGTTGCAG CTGAGACATG A

>Vigan.02G053200.01
MAFAGTTQKC MACDKTVYLV DKLTADNRVF HKACFRCHHC KGTLKLSNYN SFEGVLYCKP HFDQLFKRTG SLDKSFEGTP
KIAKPDKTGE EKPAATKVLN MFGGTRDKCA GCQKTVYPTE KVTVNGTPYH KSCFKCTHGG CVISPSNYIA HDGKLYCKHH
HIQLIKEKGN LSQLEGDNEK STIQEKTNGE VVAAET*