VIGGS:GBrowse

Vigan.02G060900.01

Basic Information:

Name:	Vigan.02G060900.01 Multiple alignment Variant Information
Position:	Chr02:4544988..4547233 (+ strand)
Length:	2246

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JTX5, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Biological Process: response to heat (GO:0009408)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Heat shock transcription factor, plant (IPR027709)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:5.99,29.20,10.07,7.18,6.99,3.46,0.86,1.27
Arabidopsis thaliana homolog:	AT2G26150.1

Automatic updates:

Name:	NM_001287459 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat stress transcription factor 8 (HSF-08), mRNA.
PubMed ID:	25416131 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:4544988..4545174 (+ strand)
Length:	187
Type:	five_prime_UTR

Position:	Chr02:4545175..4545483 (+ strand)
Length:	309
Type:	CDS

Position:	Chr02:4545699..4546520 (+ strand)
Length:	822
Type:	CDS

Position:	Chr02:4546521..4547233 (+ strand)
Length:	713
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G060900.01
CTTCTCACAC TCTTAAAAAA TCTCTTTCAG TGTCCCTCTC TCTCTCTAGA ACCTTCCTTC TCTCATCCCT TAAATTCCTT
ATTTCCTAAG CCCCAAGTAA ACCCTTGCTT AATTCACACA TAGTAATCTA CCAAACTCTT TCTCACATAT ACTTATAGCA
GAGAGATACA GTTTCCAATA AAAGAAAATG AAGGGAGGTA CAGTGAAAGA GGAAGAAACA TTCGCATTTG CAGCTGCTGC
TCCTTCTTCA CCTTCATCCT CGACTTCCAA CCTCTTCCCG CAACCAAGGG AAGGGTTGCA CGATGTGGGT CCACCTCCGT
TTCTCACCAA AACCTTCGAC GTGGTCGAAG ACCCTTCCAC CAACGACATC GTCTCCTGGA GCAGAGCACG CAACAGTTTC
GTCGTTTGGG ACTCTCACAA GTTCTCCACC ACCATCTTGC CTCGTTACTT CAAACACAAC AATTTCTCCA GCTTCGTCCG
ACAACTCAAC ACCTATGGTT TTAGAAAAGT TGATCCTGAC AAATGGGAAT TTGCGAACGA AGGTTTTCTG GCGGGACAGA
GGCACTTGTT GAAGACGATC AAGAGAAGGA GGCACGTAAC ACAGATGCAG TCACACGAGG GAGGAAGTGG AGCTTGCGTT
GAATTGGGGG AGTTTGGATT GGAAGGTGAG ATTGAGAGGT TGAGGAGAGA CAGGACAGTT TTGATGGCTG AAATTGTGAA
GTTGAGGCAA CAACAGCACA ATTCAAGGGA GCAATTGTTG TCCATGGAGA GCAGATTGCA AGTCAGCGAG AAGAAACATC
AGCAGATGAT GACTTTTCTA GCTAAGGCAC TCGACAATCA GACTTTTATT CAGCAGTTCC TTCACAGGAA CGCTCAGAAG
AAAGAGTTGC AAGGTGGTAG AAGAAAAAGG AGATTAACTG CTTCCCCAAG CGTGGAGAAT TTGCAGCAAG ATCCTGTGAT
TGATGCGGCA TTGCCTGTTG AAGAAGAATC CACTAATATT GAGTCGCACA TGGAGTCTCT TCTCTCAGCT GTTTGTGATG
ATGATCCATT AGAATCGAGC TCTGAATTAG AAGACCCGAT TTTAGGTTCA GTTCCTACAA CTGGTGGTGG TAGTGATTTG
GGGGTGGTAA GTGATGCAAT CTGGGAGGAT TTACTGAACC AAGACTTGGT TGCTGCGAAC CATGAGGAGG AAGTTGTGAT
TGGTGATTTT TCACAAGTTG ATGTTCCTGT GGAGGATTTG GTTGCTGATC CTGATGAGTG GAGTGAGGAT TTGCAGAACC
TTGTGGATCA TATGGGTTAT CTTGCGTCCA AACCCTAGTT GACTATGACA ATTTTTATCA TCTAGGAGTT CAGATAAACT
ATCCCCCCTA GAACCATTGT GGTATAATTT CATGAGGCTT CATTGATTTG TTAATATTTG TGGCTTGATA ATTTATGTGA
TTGTAATTGA TGTAGCATAT GAATGATTGC AGCAGGGAAG GTGGTTGCTG CAGAAGAGGT CCTGAGATAT TGCTCTTTGT
CTGCTGTATC CTTTGTAAAC AGACATGTGT TTTGTGAATA GCTGAGTATT TCTTGTACCA GTAATGATGA TACTGTTTTT
ACTATGTTGG TGCCCCCTTT GGATAACTAC ATTGGACGTT TTCTTTTGCA GGTAGGTTAA AACAGATGTC GAAGGGGCCT
ATTGATTGGG AAAAGATGTA GTCATAATCT AACGGTAATT TGTTGAATTG TCAAATTTTC AGTGTGGAGA GACTGTGAAG
TAAGATCATT GACGGATTCC AAAGAAGAAT ATGATTAACA ATTCCTTTAC TCATCAGCTA TAGCTCACCT TCTCCATCAG
TACACGCTGA ATAAAGGAAA TAACCTTTCT TCCTGTTTCA TCTTTTATTT TATTCTATAT TTTTATGTTG CTTTTCAAAT
CATACCAAAT ACACTAAATC ACTCATTTAG TCAGGATAGC AAATAAACTC GTTATTGTTC CTTGCTCATT TAAAACATTA
TATTAGTTTT TTTGTTATTA GATTTATTAA A

[show][hide][copy]CDS

>Vigan.02G060900.01
ATGAAGGGAG GTACAGTGAA AGAGGAAGAA ACATTCGCAT TTGCAGCTGC TGCTCCTTCT TCACCTTCAT CCTCGACTTC
CAACCTCTTC CCGCAACCAA GGGAAGGGTT GCACGATGTG GGTCCACCTC CGTTTCTCAC CAAAACCTTC GACGTGGTCG
AAGACCCTTC CACCAACGAC ATCGTCTCCT GGAGCAGAGC ACGCAACAGT TTCGTCGTTT GGGACTCTCA CAAGTTCTCC
ACCACCATCT TGCCTCGTTA CTTCAAACAC AACAATTTCT CCAGCTTCGT CCGACAACTC AACACCTATG GTTTTAGAAA
AGTTGATCCT GACAAATGGG AATTTGCGAA CGAAGGTTTT CTGGCGGGAC AGAGGCACTT GTTGAAGACG ATCAAGAGAA
GGAGGCACGT AACACAGATG CAGTCACACG AGGGAGGAAG TGGAGCTTGC GTTGAATTGG GGGAGTTTGG ATTGGAAGGT
GAGATTGAGA GGTTGAGGAG AGACAGGACA GTTTTGATGG CTGAAATTGT GAAGTTGAGG CAACAACAGC ACAATTCAAG
GGAGCAATTG TTGTCCATGG AGAGCAGATT GCAAGTCAGC GAGAAGAAAC ATCAGCAGAT GATGACTTTT CTAGCTAAGG
CACTCGACAA TCAGACTTTT ATTCAGCAGT TCCTTCACAG GAACGCTCAG AAGAAAGAGT TGCAAGGTGG TAGAAGAAAA
AGGAGATTAA CTGCTTCCCC AAGCGTGGAG AATTTGCAGC AAGATCCTGT GATTGATGCG GCATTGCCTG TTGAAGAAGA
ATCCACTAAT ATTGAGTCGC ACATGGAGTC TCTTCTCTCA GCTGTTTGTG ATGATGATCC ATTAGAATCG AGCTCTGAAT
TAGAAGACCC GATTTTAGGT TCAGTTCCTA CAACTGGTGG TGGTAGTGAT TTGGGGGTGG TAAGTGATGC AATCTGGGAG
GATTTACTGA ACCAAGACTT GGTTGCTGCG AACCATGAGG AGGAAGTTGT GATTGGTGAT TTTTCACAAG TTGATGTTCC
TGTGGAGGAT TTGGTTGCTG ATCCTGATGA GTGGAGTGAG GATTTGCAGA ACCTTGTGGA TCATATGGGT TATCTTGCGT
CCAAACCCTA G

[show][hide][copy]PROTEIN

>Vigan.02G060900.01
MKGGTVKEEE TFAFAAAAPS SPSSSTSNLF PQPREGLHDV GPPPFLTKTF DVVEDPSTND IVSWSRARNS FVVWDSHKFS
TTILPRYFKH NNFSSFVRQL NTYGFRKVDP DKWEFANEGF LAGQRHLLKT IKRRRHVTQM QSHEGGSGAC VELGEFGLEG
EIERLRRDRT VLMAEIVKLR QQQHNSREQL LSMESRLQVS EKKHQQMMTF LAKALDNQTF IQQFLHRNAQ KKELQGGRRK
RRLTASPSVE NLQQDPVIDA ALPVEEESTN IESHMESLLS AVCDDDPLES SSELEDPILG SVPTTGGGSD LGVVSDAIWE
DLLNQDLVAA NHEEEVVIGD FSQVDVPVED LVADPDEWSE DLQNLVDHMG YLASKP*