GBrowse Details

Vigan.02G062900.01

Basic Information:
Name: Vigan.02G062900.01
Multiple alignment
Variant Information
Position: Chr02:4689438..4698176 (+ strand)
Length: 8739
Functional Information:
Description: Similar to U1 small nuclear ribonucleoprotein A-like. [XP_004501453.1, Cicer arietinum]
GO: Biological Process: mRNA splicing, via spliceosome (GO:0000398)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: snRNA binding (GO:0017069)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'' (IPR024888)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.97,11.40,9.29,7.05,10.45,10.97,10.56,6.66
Automatic updates:
Name: NM_001255452 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA-binding protein (LOC100816255), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:4689438..4689513 (+ strand)
Length: 76
Type: five_prime_UTR
Position: Chr02:4689514..4689562 (+ strand)
Length: 49
Type: CDS
Position: Chr02:4690209..4690306 (+ strand)
Length: 98
Type: CDS
Position: Chr02:4690391..4690655 (+ strand)
Length: 265
Type: CDS
Position: Chr02:4691024..4691085 (+ strand)
Length: 62
Type: CDS
Position: Chr02:4692241..4692322 (+ strand)
Length: 82
Type: CDS
Position: Chr02:4697275..4697381 (+ strand)
Length: 107
Type: CDS
Position: Chr02:4697382..4698176 (+ strand)
Length: 795
Type: three_prime_UTR


>Vigan.02G062900.01
AAGGGCAGTC TGCCCCCTTT ACTCATTCAC ATTTTTTCTT TCTTTCCACT GTGACCAAAC AGAGAGAAGA GTTTCCATGG
CGGATCCCTA CTACCCATAT AGTGCTCCGG CAGCTGCCGA CGGAGCAAGT ATTGCGAGGA CCAGCTTTGC TGGATATATT
CCAACTGAGC CTTCAAATTC TACTGAACTG CGGGGCATTG GATCAGATTA CCTGCAAAGA GACATAGGCT TGTTTTATAG
TGCAGATGAT ACTTTGGGAT CTAGGGTTCA TTCTGAGCCT GTTAAGGGTT ATTCACCTCT TGCAGATCCT GACCCGACTA
AAAAACGAGA TACGGCACCA TTAGGCATTA GTCATGGTGT TTCTGATGTG AACAGTGAAA GAGCATCATC TAAAAACACT
TATGATGGTC TGCCTATCTC AGCAGCGGAC TCAAACATTC TGTTTGTGGG TGGACTTCCA AATAACTGCA CTAGAAGGGA
AGTTGGGCAT CTTTTCCGCC CCTTTATTGG CTATAAGGAT ATCAGAGTTG TTCACAAGGA GCCTAGACGT AGCGGTGACA
AGGCTATGAC TTTGTGTTTT GTGGAGTTTG TTGACTCAAA ATGTGCTCTC ACTGCCCTGG AAGCCCTGCA AGGCTATAAA
TTTGATGATA AAAAGCCTGA CTCGCCAAAC CTAAAAATAC AGTTTGCGCA CTTTCCATTC CGTCTACCGT CTGATCATGG
CAACAGCATA ACAACATGAC ACAGACGGCT GGACATTCAT TTCTTGGGTG TAATGGATTT TGATGGTGTT GAGATGAACT
CTATCAGATA GAGGTATTCA CTTTTATACT CCGAGTTTTA GGTTAGACCT TCCTGGCTGT TGAATGTAGG ATATGGATAT
GCAAGAAGTC TGGTAACAGG ACAATTTTTA ATCTAAAATA TGTTGATAGA ATTTTCATTA TATTTTGGCC CCTATTTTCA
GTTAGCCTCT CCAATCACCG GATTAAGGCC GTGGCTTGTA CATTTGAGTT TTGACCCTCT TATATCTGAC GATGGTTGAA
GTTCATGTAT TCGGCTGCCC AAGAAGATAG TTGTAACTTT GGTCATGAAC TGTAAAAATA ATACTAATAG TTCGGAGTTG
GCTCAGTATG CATTCGGGCT ACATTATATC AGTAAATCAT GGCATACTAC GTGTCTTTTG TCTGAACTAA ATATAAACAT
TGCATTGCAT TGCTTTAAGC TGTATATGCT ATCCAGAGGA ACACGTTCTC CTGGTGTTTG AATTTTATCC AAAGCTGATT
TAATGGCTTG CCTCTTCTCA TCTTTGCCTT ACGTCGAAGA TTAATGCATG GTGCAAGATT CCAAATAACG ATGACCATTG
CCTCGTGATG ATGATTGATG TTGAGGTATT TGCTTGTTGG CTAATAATTG GCGGGGTATT AAAAATTACT GCTGCACTTT
TTGGCTACTC TTTAGGGATT TACTTATAGA CATGTCCGAT GGCTACCCCG ATTTCTCAGC GATTCTTAAA TTATCTATGC
ACTGTAGCCA ATGG

>Vigan.02G062900.01
ATGGCGGATC CCTACTACCC ATATAGTGCT CCGGCAGCTG CCGACGGAGC AAGTATTGCG AGGACCAGCT TTGCTGGATA
TATTCCAACT GAGCCTTCAA ATTCTACTGA ACTGCGGGGC ATTGGATCAG ATTACCTGCA AAGAGACATA GGCTTGTTTT
ATAGTGCAGA TGATACTTTG GGATCTAGGG TTCATTCTGA GCCTGTTAAG GGTTATTCAC CTCTTGCAGA TCCTGACCCG
ACTAAAAAAC GAGATACGGC ACCATTAGGC ATTAGTCATG GTGTTTCTGA TGTGAACAGT GAAAGAGCAT CATCTAAAAA
CACTTATGAT GGTCTGCCTA TCTCAGCAGC GGACTCAAAC ATTCTGTTTG TGGGTGGACT TCCAAATAAC TGCACTAGAA
GGGAAGTTGG GCATCTTTTC CGCCCCTTTA TTGGCTATAA GGATATCAGA GTTGTTCACA AGGAGCCTAG ACGTAGCGGT
GACAAGGCTA TGACTTTGTG TTTTGTGGAG TTTGTTGACT CAAAATGTGC TCTCACTGCC CTGGAAGCCC TGCAAGGCTA
TAAATTTGAT GATAAAAAGC CTGACTCGCC AAACCTAAAA ATACAGTTTG CGCACTTTCC ATTCCGTCTA CCGTCTGATC
ATGGCAACAG CATAACAACA TGA

>Vigan.02G062900.01
MADPYYPYSA PAAADGASIA RTSFAGYIPT EPSNSTELRG IGSDYLQRDI GLFYSADDTL GSRVHSEPVK GYSPLADPDP
TKKRDTAPLG ISHGVSDVNS ERASSKNTYD GLPISAADSN ILFVGGLPNN CTRREVGHLF RPFIGYKDIR VVHKEPRRSG
DKAMTLCFVE FVDSKCALTA LEALQGYKFD DKKPDSPNLK IQFAHFPFRL PSDHGNSITT *