VIGGS:GBrowse

Vigan.02G065500.01

Basic Information:

Name:	Vigan.02G065500.01 Multiple alignment Variant Information
Position:	Chr02:4906773..4909966 (+ strand)
Length:	3194

Functional Information:

Description:	Similar to Ferredoxin-related. [XP_007012420.1, Theobroma cacao]
InterPro:	CAP domain (IPR014044)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.30,12.90,44.72,16.24,28.80,128.80,40.77,68.25

Automatic updates:

Name:	NM_001248345 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305941 (LOC100305941), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001317478 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max SCP-like extracellular protein domain-containing protein (LOC100789560), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:4906773..4907030 (+ strand)
Length:	258
Type:	five_prime_UTR

Position:	Chr02:4907031..4907106 (+ strand)
Length:	76
Type:	CDS

Position:	Chr02:4909155..4909762 (+ strand)
Length:	608
Type:	CDS

Position:	Chr02:4909763..4909966 (+ strand)
Length:	204
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G065500.01
CGACAGAAAA ATGATGTAAT TTGGTTGGCA ATAACAACTT CAATTTATTT TTTAATGGAA TTTTACTTGC TGTAATGGTA
TATTGCAGAA TCTTTGAGAA CAATGAAGGT GAAAAAAAAA GAGAAAATAT AAAGTTGGGA AGGACCATTC AGTTGGTGGA
ATTTGTTGCA GTTTATTGAG GTTTGAACCA GAAGGCATCA GTTCGAGACA GACACAAAGC AGATCTGTCT TGAACTTCTG
TGTCCTAAAA CAGCAACAAT GGCAAAAACC ATGACCGTGT GGTATCTTTT GCTCACCCTT TCCTTCGTTT ATGTTGCCAC
TGCTGATACT CAAATCAAAA TAACTAACAA TCCTGCTGAC AAGTTGGTAG CTGCAATAAA CGAAAACAGA ACCGCTCACA
AGGTATCAAC CTTAACAGAC AACCCGGGTC TTGCATGTAT TGCTCTACAA TACATTAAGG CATACCAAGG TGATTGTGAT
GCTGTGGGTG GACCTGATGG GAAGAAACCT CCAGAATCTC AATTTGCGGA AGTTTTTGCT CCAAACTGTG GTGTTCAGGC
ATCAACTCTT GCTCCTATAA CTGGTCGTTT CCTGGGGTGC CAGACTAATT ATGTACATGC ACCCGAGGCA TTTTCTGAGA
TCCTCATAAG GAACCAAAAG AGCTTAGACA TACTCTACAG TAGGAACCAC ACTCAGCTTG GTGCTGCTGT GACAGGTACT
GATGGAGGGT CTCCTTATTT CTGGTGTGTG CTGTTTAGCA GTGGCAAACC TAACCAAACC TTTGCTTTGG AGGGTGGTGT
GGCTAAAATA ACAAAGCCTG GTTGCTTCAG TGGAGCCAAT GATGAGTGCA GTGGAGCCAG TGATTATTGG TCACCGCTCA
ATGGGATGTG GGTTTTGGCC ACTTCAGTTC TTATTGCAAT GGGGTTTGGT TTAGCATTAT GAGCATAAAT TGAGATATAT
TGTATGATTT CTACATGATT TGGAGGAAGG TAGTCTTTGT TGTATATGAA AGGCTTGGCC TCAGCTATTC TTTTTCCCCC
TTGTTTGATT TGTAATTTGA GAAGAGCTTC ATTTTCCTCA CTTTTTTGTT TACATATATA AATTTTCTGG TATTGGCTCT
TGCAAATTCT TTTACCTAAG TTTCTT

[show][hide][copy]CDS

>Vigan.02G065500.01
ATGGCAAAAA CCATGACCGT GTGGTATCTT TTGCTCACCC TTTCCTTCGT TTATGTTGCC ACTGCTGATA CTCAAATCAA
AATAACTAAC AATCCTGCTG ACAAGTTGGT AGCTGCAATA AACGAAAACA GAACCGCTCA CAAGGTATCA ACCTTAACAG
ACAACCCGGG TCTTGCATGT ATTGCTCTAC AATACATTAA GGCATACCAA GGTGATTGTG ATGCTGTGGG TGGACCTGAT
GGGAAGAAAC CTCCAGAATC TCAATTTGCG GAAGTTTTTG CTCCAAACTG TGGTGTTCAG GCATCAACTC TTGCTCCTAT
AACTGGTCGT TTCCTGGGGT GCCAGACTAA TTATGTACAT GCACCCGAGG CATTTTCTGA GATCCTCATA AGGAACCAAA
AGAGCTTAGA CATACTCTAC AGTAGGAACC ACACTCAGCT TGGTGCTGCT GTGACAGGTA CTGATGGAGG GTCTCCTTAT
TTCTGGTGTG TGCTGTTTAG CAGTGGCAAA CCTAACCAAA CCTTTGCTTT GGAGGGTGGT GTGGCTAAAA TAACAAAGCC
TGGTTGCTTC AGTGGAGCCA ATGATGAGTG CAGTGGAGCC AGTGATTATT GGTCACCGCT CAATGGGATG TGGGTTTTGG
CCACTTCAGT TCTTATTGCA ATGGGGTTTG GTTTAGCATT ATGA

[show][hide][copy]PROTEIN

>Vigan.02G065500.01
MAKTMTVWYL LLTLSFVYVA TADTQIKITN NPADKLVAAI NENRTAHKVS TLTDNPGLAC IALQYIKAYQ GDCDAVGGPD
GKKPPESQFA EVFAPNCGVQ ASTLAPITGR FLGCQTNYVH APEAFSEILI RNQKSLDILY SRNHTQLGAA VTGTDGGSPY
FWCVLFSSGK PNQTFALEGG VAKITKPGCF SGANDECSGA SDYWSPLNGM WVLATSVLIA MGFGLAL*