GBrowse Details

Vigan.02G065800.01

Basic Information:
Name: Vigan.02G065800.01
Multiple alignment
Variant Information
Position: Chr02:4916082..4924614 (+ strand)
Length: 8533
Functional Information:
Description: Similar to Uncharacterized protein. [I1K8G7, Glycine max]
GO: Biological Process: cation transport (GO:0006812)
Biological Process: metal ion transport (GO:0030001)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: cation-transporting ATPase activity (GO:0019829)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Cation-transporting P-type ATPase (IPR001757)
Heavy metal-associated domain, HMA (IPR006121)
P-type ATPase, A domain (IPR008250)
P-type ATPase, phosphorylation site (IPR018303)
HAD-like domain (IPR023214)
P-type ATPase, cytoplasmic domain N (IPR023299)
Cation-transporting P-type ATPase, subfamily IB (IPR027256)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.97,3.25,17.80,32.18,3.10,5.27,5.98,8.59
Arabidopsis thaliana homolog: AT4G33520.2, AT5G21930.1
Automatic updates:
Name: DQ418731 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max copper P1B-ATPase (HMA8) mRNA, complete cds; chloroplast.
PubMed ID: 17169574 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:4916082..4916262 (+ strand)
Length: 181
Type: five_prime_UTR
Position: Chr02:4916263..4916881 (+ strand)
Length: 619
Type: CDS
Position: Chr02:4917005..4917082 (+ strand)
Length: 78
Type: CDS
Position: Chr02:4917207..4917304 (+ strand)
Length: 98
Type: CDS
Position: Chr02:4917407..4917460 (+ strand)
Length: 54
Type: CDS
Position: Chr02:4917659..4917745 (+ strand)
Length: 87
Type: CDS
Position: Chr02:4918301..4918465 (+ strand)
Length: 165
Type: CDS
Position: Chr02:4918739..4918849 (+ strand)
Length: 111
Type: CDS
Position: Chr02:4918978..4919046 (+ strand)
Length: 69
Type: CDS
Position: Chr02:4919342..4919451 (+ strand)
Length: 110
Type: CDS
Position: Chr02:4919782..4919887 (+ strand)
Length: 106
Type: CDS
Position: Chr02:4920339..4920405 (+ strand)
Length: 67
Type: CDS
Position: Chr02:4921126..4921205 (+ strand)
Length: 80
Type: CDS
Position: Chr02:4921639..4922090 (+ strand)
Length: 452
Type: CDS
Position: Chr02:4922438..4922612 (+ strand)
Length: 175
Type: CDS
Position: Chr02:4923019..4923150 (+ strand)
Length: 132
Type: CDS
Position: Chr02:4923736..4923886 (+ strand)
Length: 151
Type: CDS
Position: Chr02:4924351..4924439 (+ strand)
Length: 89
Type: CDS
Position: Chr02:4924440..4924614 (+ strand)
Length: 175
Type: three_prime_UTR


>Vigan.02G065800.01
CTTACCTCTG ACATTAAGCT TACAGTGATT ATCCGTTGGT AGCCGCCAGC TGCGTAGGGA ATGGACGTGT CAAGTTTTGA
TTGGCGATGT TTTTAACATT CAACGAAGGT AGGCCTCTAA CGTGCGAAAT TAGCAGGTAA TATGAAAAAT TGGTGGTTCA
CAACTTCTTC TCTCTCGGAT TATGGCTACT CGTCTCTTCA GATTTCCTCT CACCTCGCAA CCCAAGCTCT GCTTCAATTA
CACGCCCAAC CATCCTGTCC AATTCATATC TCCGACCAAA CGACGTCGCA ACCGCCACCG CCATGAGATT CTCCGTCCAT
CATTCGCAGT ATCCAGCTCC TTCCGGACCG AGATTGGCTC ACCTGAATCA GTTCTTATCG GAGTCCAGAG AGAGAAAAAA
GACTCGCCGG TTCTGCTTGA CGTCACCGGC ATGATGTGCG GTGCGTGCGT CTCCCGAGTC AAAAACATCC TGTCCGCTGA
CGAACGAGTT GACTCTGTCG TGGTCAACAT GCTGACCGAG ACTGCCGCCG TTAATCTGCG CCGGACCGAG GAGGAACCGG
CGAGCGTCGC CGAGAGCCTC GCACGGAGAC TGAGCGACTG CGGATTTCCG ACGAAGCGGA GAGCGTCGAG TTCGGGAGTG
ACGGAAAACG TGAGGAAGTG GAAGGAATTG GTGAAGAAGA AGGAGGAATT GGTCGCCAAG AGTCGAAGCC GCGTCGCGTT
CGCTTGGACA TTGGTCGCAT TGTGCTGCGG GTCGCACGCT TCGCATATCT TTCACTCTCT GGGGATCCAC ATTGCTCATG
GATCGCTTTG GGAGATTCTT CATAGTTCGT ACGTGAAGGG TGGTTTAGCT TTGGGGGCTC TATTGGGACC AGGACGAGAG
TTACTCTTTG ATGGCCTAAA TGCGTTTAAG AAGGGATCGC CTAACATGAA CTCTCTCGTG GGATTTGGTT CTATAGCCGC
ATTCATCATT AGTTCCATCC CGCTACTTAA CCCCAGCCTA GCATGGGATG CATCCTTCTT TGATGAACCG GTCATGCTTC
TTGGTTTCGT GCTTCTGGGA CGTTCTCTGG AGGAAAAGGC AAGGATCCAG GCATCTAGCG ATATGAATGA ACTGCTTTCA
CTTATATCTA CTCAGTCAAG ACTTGTGATT ACTTCAACAG AAGGTTCTCC TTCTACTGAC ACTGTGCTTT GCTCTGATGC
AATTTGTGTT GAAGTCCCAA CTGATGATAT TCGAGTAGGT GATTCTGTGT TGGTGTTGCC TGGAGAAACT ATTCCTATAG
ATGGAAAGGT TATTTCAGGA AGAAGTGTTG TAGATGAATC CATGCTTACA GGGGAATCAC TTCCTGTATT TAAGGAGAAA
GGCCTCACAG TTTCAGCAGG AACTATAAAT TGGGATGGTC CTTTAAGGAT TGAAGCTTCT TCAACTGGTT CCAACACTGT
GATATCGAAG ATTGTACGCA TGGTTGAGGA GGCTCAATCA CGTGAAGCAC CTGTACAAAG GCTTGCAGAT TCAATAGCAG
GGCCATTTGT ATACAGTGTA ATGACTCTGT CAGCAGCAAC ATTTGCTTTT TGGTATTTTT TTGGATCACA GATATTTCCT
GATGTGTTGC TCAATGATAT TGCGGGCCCA GAAGGAGATC CTTTGCTTTT GAGTTTAAAA CTATCTGTAG ATGTTTTGGT
TGTTTCTTGT CCTTGTGCAT TGGGTCTTGC TACGCCCACG GCAATCCTGG TTGGCACCTC ACTTGGAGCA AGAAAAGGAC
TTCTTATTAG GGGAGGGGAT GTGCTGGAAC GCTTGGCTAG AATAAACTAT ATTGCTCTAG ACAAGACAGG AACCCTGACG
AAAGGAAAAC CAGTTGTGTC GGCCATAGGC TCTATCCATT ATGGAGAGTC TGAAATTCTT CGGATTGCTG CTGCAGTGGA
GAAGACTGCA TCTCACCCAA TAGCAAAGGC TATTATCAAT AAAGCTGAGT CATTGGAGTT GATCCTTCCT GTCACAAAGA
GACAGTTAGT AGAACCAGGT TTTGGTACAT TAGCAGAAGT AGATGGGCAT TTGATTGCAG TTGGATCTTT GGAATGGGTT
CATGAACGCT TCCAAACAAA AGTAAATCCG TCCGATCTAA CAAATCTGGA ACATAGTTTG ATGAATCATT CATCAAATAC
AGCATCTTCT AAGTATTCGA AAACTGTTGT CTATGTTGGA CGTGAAGGAG AAGGCATCAT TGGTGCTATT GCCATAGCTG
ACACTGTGCG TGAAGATGCT GAATCTACTG TGATGAGGCT CAAGCAGAAG GGGATTAAAA CGGTACTCTT GTCAGGAGAC
AGGGAAGAGG CAGTTGCAAC AGTAGCAGAT ACAGTTGGAA TTGAAAATGA TTTTGTCAAA GCATCTTTGT CTCCACAACA
GAAATCTAGG TTTATTTCCT CTCTAAAAGC TGCCGGACAT CATGTTGCGA TGGTAGGTGA TGGGATAAAT GATGCACCCT
CTTTGGCTGT AGCTGATGTT GGGATTGCTC TGCAGAATGA AGCTCAAGAG AATGCTGCCT CGGATGCAGC ATCTATTATA
CTTCTAGGGA ACAAAATTTC ACAAGTTGTC GATGCGCTCG ACCTAGCACA GGCAACAATG GCAAAAGTGT ACCAAAATTT
GTCTTGGGCG GTCGCCTATA ATGTTGTTGC CATTCCCATT GCTGCCGGTG TATTACTTCC CCAATTTGAC TTCGCTATGA
CACCGTCACT TTCAGGAGGA CTGATGGCCC TGAGCTCCAT CTTCGTGGTT GGCAACTCAC TGCTTCTGCA GCTTCATGGG
TCTCCGATCC CTAGAAAGGG CTAACTCTTG ACACCAGTTA TCCCCATTCC GGCACATATG CTTAAATAAG CTAGCATAGA
GTACTTTAGC CCAAACCTGT AATATATTTG TATCTATTAA AAGATTAGAG TGTATATTTT AATAAATTAC AGGAAAAACA
TTGTAATAAA TACTTATATT CTCAGTGAAT GACAACGTA

>Vigan.02G065800.01
ATGGCTACTC GTCTCTTCAG ATTTCCTCTC ACCTCGCAAC CCAAGCTCTG CTTCAATTAC ACGCCCAACC ATCCTGTCCA
ATTCATATCT CCGACCAAAC GACGTCGCAA CCGCCACCGC CATGAGATTC TCCGTCCATC ATTCGCAGTA TCCAGCTCCT
TCCGGACCGA GATTGGCTCA CCTGAATCAG TTCTTATCGG AGTCCAGAGA GAGAAAAAAG ACTCGCCGGT TCTGCTTGAC
GTCACCGGCA TGATGTGCGG TGCGTGCGTC TCCCGAGTCA AAAACATCCT GTCCGCTGAC GAACGAGTTG ACTCTGTCGT
GGTCAACATG CTGACCGAGA CTGCCGCCGT TAATCTGCGC CGGACCGAGG AGGAACCGGC GAGCGTCGCC GAGAGCCTCG
CACGGAGACT GAGCGACTGC GGATTTCCGA CGAAGCGGAG AGCGTCGAGT TCGGGAGTGA CGGAAAACGT GAGGAAGTGG
AAGGAATTGG TGAAGAAGAA GGAGGAATTG GTCGCCAAGA GTCGAAGCCG CGTCGCGTTC GCTTGGACAT TGGTCGCATT
GTGCTGCGGG TCGCACGCTT CGCATATCTT TCACTCTCTG GGGATCCACA TTGCTCATGG ATCGCTTTGG GAGATTCTTC
ATAGTTCGTA CGTGAAGGGT GGTTTAGCTT TGGGGGCTCT ATTGGGACCA GGACGAGAGT TACTCTTTGA TGGCCTAAAT
GCGTTTAAGA AGGGATCGCC TAACATGAAC TCTCTCGTGG GATTTGGTTC TATAGCCGCA TTCATCATTA GTTCCATCCC
GCTACTTAAC CCCAGCCTAG CATGGGATGC ATCCTTCTTT GATGAACCGG TCATGCTTCT TGGTTTCGTG CTTCTGGGAC
GTTCTCTGGA GGAAAAGGCA AGGATCCAGG CATCTAGCGA TATGAATGAA CTGCTTTCAC TTATATCTAC TCAGTCAAGA
CTTGTGATTA CTTCAACAGA AGGTTCTCCT TCTACTGACA CTGTGCTTTG CTCTGATGCA ATTTGTGTTG AAGTCCCAAC
TGATGATATT CGAGTAGGTG ATTCTGTGTT GGTGTTGCCT GGAGAAACTA TTCCTATAGA TGGAAAGGTT ATTTCAGGAA
GAAGTGTTGT AGATGAATCC ATGCTTACAG GGGAATCACT TCCTGTATTT AAGGAGAAAG GCCTCACAGT TTCAGCAGGA
ACTATAAATT GGGATGGTCC TTTAAGGATT GAAGCTTCTT CAACTGGTTC CAACACTGTG ATATCGAAGA TTGTACGCAT
GGTTGAGGAG GCTCAATCAC GTGAAGCACC TGTACAAAGG CTTGCAGATT CAATAGCAGG GCCATTTGTA TACAGTGTAA
TGACTCTGTC AGCAGCAACA TTTGCTTTTT GGTATTTTTT TGGATCACAG ATATTTCCTG ATGTGTTGCT CAATGATATT
GCGGGCCCAG AAGGAGATCC TTTGCTTTTG AGTTTAAAAC TATCTGTAGA TGTTTTGGTT GTTTCTTGTC CTTGTGCATT
GGGTCTTGCT ACGCCCACGG CAATCCTGGT TGGCACCTCA CTTGGAGCAA GAAAAGGACT TCTTATTAGG GGAGGGGATG
TGCTGGAACG CTTGGCTAGA ATAAACTATA TTGCTCTAGA CAAGACAGGA ACCCTGACGA AAGGAAAACC AGTTGTGTCG
GCCATAGGCT CTATCCATTA TGGAGAGTCT GAAATTCTTC GGATTGCTGC TGCAGTGGAG AAGACTGCAT CTCACCCAAT
AGCAAAGGCT ATTATCAATA AAGCTGAGTC ATTGGAGTTG ATCCTTCCTG TCACAAAGAG ACAGTTAGTA GAACCAGGTT
TTGGTACATT AGCAGAAGTA GATGGGCATT TGATTGCAGT TGGATCTTTG GAATGGGTTC ATGAACGCTT CCAAACAAAA
GTAAATCCGT CCGATCTAAC AAATCTGGAA CATAGTTTGA TGAATCATTC ATCAAATACA GCATCTTCTA AGTATTCGAA
AACTGTTGTC TATGTTGGAC GTGAAGGAGA AGGCATCATT GGTGCTATTG CCATAGCTGA CACTGTGCGT GAAGATGCTG
AATCTACTGT GATGAGGCTC AAGCAGAAGG GGATTAAAAC GGTACTCTTG TCAGGAGACA GGGAAGAGGC AGTTGCAACA
GTAGCAGATA CAGTTGGAAT TGAAAATGAT TTTGTCAAAG CATCTTTGTC TCCACAACAG AAATCTAGGT TTATTTCCTC
TCTAAAAGCT GCCGGACATC ATGTTGCGAT GGTAGGTGAT GGGATAAATG ATGCACCCTC TTTGGCTGTA GCTGATGTTG
GGATTGCTCT GCAGAATGAA GCTCAAGAGA ATGCTGCCTC GGATGCAGCA TCTATTATAC TTCTAGGGAA CAAAATTTCA
CAAGTTGTCG ATGCGCTCGA CCTAGCACAG GCAACAATGG CAAAAGTGTA CCAAAATTTG TCTTGGGCGG TCGCCTATAA
TGTTGTTGCC ATTCCCATTG CTGCCGGTGT ATTACTTCCC CAATTTGACT TCGCTATGAC ACCGTCACTT TCAGGAGGAC
TGATGGCCCT GAGCTCCATC TTCGTGGTTG GCAACTCACT GCTTCTGCAG CTTCATGGGT CTCCGATCCC TAGAAAGGGC
TAA

>Vigan.02G065800.01
MATRLFRFPL TSQPKLCFNY TPNHPVQFIS PTKRRRNRHR HEILRPSFAV SSSFRTEIGS PESVLIGVQR EKKDSPVLLD
VTGMMCGACV SRVKNILSAD ERVDSVVVNM LTETAAVNLR RTEEEPASVA ESLARRLSDC GFPTKRRASS SGVTENVRKW
KELVKKKEEL VAKSRSRVAF AWTLVALCCG SHASHIFHSL GIHIAHGSLW EILHSSYVKG GLALGALLGP GRELLFDGLN
AFKKGSPNMN SLVGFGSIAA FIISSIPLLN PSLAWDASFF DEPVMLLGFV LLGRSLEEKA RIQASSDMNE LLSLISTQSR
LVITSTEGSP STDTVLCSDA ICVEVPTDDI RVGDSVLVLP GETIPIDGKV ISGRSVVDES MLTGESLPVF KEKGLTVSAG
TINWDGPLRI EASSTGSNTV ISKIVRMVEE AQSREAPVQR LADSIAGPFV YSVMTLSAAT FAFWYFFGSQ IFPDVLLNDI
AGPEGDPLLL SLKLSVDVLV VSCPCALGLA TPTAILVGTS LGARKGLLIR GGDVLERLAR INYIALDKTG TLTKGKPVVS
AIGSIHYGES EILRIAAAVE KTASHPIAKA IINKAESLEL ILPVTKRQLV EPGFGTLAEV DGHLIAVGSL EWVHERFQTK
VNPSDLTNLE HSLMNHSSNT ASSKYSKTVV YVGREGEGII GAIAIADTVR EDAESTVMRL KQKGIKTVLL SGDREEAVAT
VADTVGIEND FVKASLSPQQ KSRFISSLKA AGHHVAMVGD GINDAPSLAV ADVGIALQNE AQENAASDAA SIILLGNKIS
QVVDALDLAQ ATMAKVYQNL SWAVAYNVVA IPIAAGVLLP QFDFAMTPSL SGGLMALSSI FVVGNSLLLQ LHGSPIPRKG
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