GBrowse Details

Vigan.02G075500.01

Basic Information:
Name: Vigan.02G075500.01
Multiple alignment
Variant Information
Position: Chr02:5792240..5794503 (+ strand)
Length: 2264
Functional Information:
Description: Similar to Uncharacterized protein. [C6T0E5, Glycine max]
InterPro: PPPDE putative peptidase domain (IPR008580)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.58,6.40,8.70,8.53,10.05,13.44,13.17,12.18
Automatic updates:
Name: BT090899 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-5J23 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:5792240..5792430 (+ strand)
Length: 191
Type: five_prime_UTR
Position: Chr02:5792431..5792569 (+ strand)
Length: 139
Type: CDS
Position: Chr02:5792854..5793141 (+ strand)
Length: 288
Type: CDS
Position: Chr02:5793800..5794044 (+ strand)
Length: 245
Type: CDS
Position: Chr02:5794045..5794503 (+ strand)
Length: 459
Type: three_prime_UTR


>Vigan.02G075500.01
TTTCGGCCGC CGATAGATGC CAGAGCCGCA CTCATAGAGA TTCTTTATCT TCTTCTTTCC ATTCTTCTTC ATTTTCTTTT
CTTTTCTTCT TCCTAACTAA AAGGACCACT CATATTCTTC TCTCTATCAC CCACAAAAAC GCTTTCTTTG TATTTTTCTC
TCCATTTCAC TGTTATTTCA GACACTCCAC AATGCTGCGT AAGCTTGTCT CAGGGCCACC CAAGAACAAG CCCGGCACCG
TCCCCGTTCA CCTCAACGTC TATGATCTCA CCCCAATCAA TGGCTATGCC TATTGGCTTG GCCTTGGTGT CTACCATTCT
GGGGTTCAAG TTCACGGTGT TGAGTACGGT TTTGGTGCAC ATGAGCATGA CACAACGGGG ATTTTTGAAG TGCAACCGAA
ACACTGTCCT GGGTTCACTT TCAGAAAGTC GATTTTCATC GGAACAACAG ATCTGGGTCA GAAAGATGTT CGGGCGTTCA
TGGAGAAACT GGCTCAGGAG TACTCTGGCA ACACCTATCA TCTCATCTCC AAAAACTGCA ACCACTTCTG TAACGATGTT
TGCCTCAAGT TAACGGGAAA GTCAATCCCT CGATGGGTCA ATCGCCTTGC TCGACTTGGT CTTCTTTGCA ACTGCGTTCT
TCCCCCTGGG CTAAATGACA CGAAGGTTCC ACAAGCTACA TCAGAGAGAG TTCAGGAGGG AGAAAAGAGG AAAATAAGAA
GTCAATCCTG CAGGTACGAG GGTTCTTCGA ATCCTTCATT GTCACGACGT TCGGCAATTA AAAGTAGTAG CCAAAGACAT
TGTCTTCCAG GATCTACATC TTTGCTTAAT GCTACTCCAG CCTCAACCTT AACAGTGAAG TAGTAAAGCT TTGACAAATA
TAGGGTGCAA GCAACCCCAG ATGAGCACGG AAGAAAGTTG TTTATTTGGT TAATCTTTCT GTTCTGATGT ATATCTGTAT
GTCAAATAGC TGAATGGTTG CTTTGTTTTG TCTCTGTTCG TTGTAAAATG GTTTCGTTCT TAGTGAATGG AAAGTTCTTC
TGTTTCTGCA TTTTTTTGCT ATGTAATCTT GATTGATCTT CCTTATTCCG TTGGGTCAGT CCGGTTTTAA AAACAAAGCA
TATTAAAGGA AAACCAAAAT CTGAGAAATT TTGTGACAAG TTGTTTCTGC AGTTTTCTCA GATATGCTTC GTTAACATCT
GTATCAAAAG ATCAACAGTT TCTCAGTTAT CTCTGTCTTG CTATGCTGTA CCTGTATGTT TTGATGCATT TTTGTTCCAC
GTAATCGTCA TCCATTAATA TTCTCATGTT TGCTATACTT TG

>Vigan.02G075500.01
ATGCTGCGTA AGCTTGTCTC AGGGCCACCC AAGAACAAGC CCGGCACCGT CCCCGTTCAC CTCAACGTCT ATGATCTCAC
CCCAATCAAT GGCTATGCCT ATTGGCTTGG CCTTGGTGTC TACCATTCTG GGGTTCAAGT TCACGGTGTT GAGTACGGTT
TTGGTGCACA TGAGCATGAC ACAACGGGGA TTTTTGAAGT GCAACCGAAA CACTGTCCTG GGTTCACTTT CAGAAAGTCG
ATTTTCATCG GAACAACAGA TCTGGGTCAG AAAGATGTTC GGGCGTTCAT GGAGAAACTG GCTCAGGAGT ACTCTGGCAA
CACCTATCAT CTCATCTCCA AAAACTGCAA CCACTTCTGT AACGATGTTT GCCTCAAGTT AACGGGAAAG TCAATCCCTC
GATGGGTCAA TCGCCTTGCT CGACTTGGTC TTCTTTGCAA CTGCGTTCTT CCCCCTGGGC TAAATGACAC GAAGGTTCCA
CAAGCTACAT CAGAGAGAGT TCAGGAGGGA GAAAAGAGGA AAATAAGAAG TCAATCCTGC AGGTACGAGG GTTCTTCGAA
TCCTTCATTG TCACGACGTT CGGCAATTAA AAGTAGTAGC CAAAGACATT GTCTTCCAGG ATCTACATCT TTGCTTAATG
CTACTCCAGC CTCAACCTTA ACAGTGAAGT AG

>Vigan.02G075500.01
MLRKLVSGPP KNKPGTVPVH LNVYDLTPIN GYAYWLGLGV YHSGVQVHGV EYGFGAHEHD TTGIFEVQPK HCPGFTFRKS
IFIGTTDLGQ KDVRAFMEKL AQEYSGNTYH LISKNCNHFC NDVCLKLTGK SIPRWVNRLA RLGLLCNCVL PPGLNDTKVP
QATSERVQEG EKRKIRSQSC RYEGSSNPSL SRRSAIKSSS QRHCLPGSTS LLNATPASTL TVK*