GBrowse Details

Vigan.02G078600.01

Basic Information:
Name: Vigan.02G078600.01
Multiple alignment
Variant Information
Position: Chr02:6082353..6085439 (- strand)
Length: 3087
Functional Information:
Description: Similar to Uncharacterized protein. [I1K8S5, Glycine max]
GO: Molecular Function: carbohydrate binding (GO:0030246)
InterPro: Carbohydrate-binding-like fold (IPR013784)
Carboxypeptidase, regulatory domain (IPR014766)
Domain of unknown function DUF2012 (IPR019008)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.96,29.70,52.91,39.65,70.44,69.38,57.02,52.48
Arabidopsis thaliana homolog: AT2G25310.1
Automatic updates:
Name: NM_001250476 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527020 (LOC100527020), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:6082353..6082664 (- strand)
Length: 312
Type: three_prime_UTR
Position: Chr02:6082665..6082759 (- strand)
Length: 95
Type: CDS
Position: Chr02:6083429..6083537 (- strand)
Length: 109
Type: CDS
Position: Chr02:6083643..6083759 (- strand)
Length: 117
Type: CDS
Position: Chr02:6083864..6083927 (- strand)
Length: 64
Type: CDS
Position: Chr02:6084117..6084225 (- strand)
Length: 109
Type: CDS
Position: Chr02:6085080..6085123 (- strand)
Length: 44
Type: CDS
Position: Chr02:6085208..6085299 (- strand)
Length: 92
Type: CDS
Position: Chr02:6085300..6085439 (- strand)
Length: 140
Type: five_prime_UTR


>Vigan.02G078600.01
CCTGATCTCA AGTGATAGAT CGTGAGAGTG CTTTGGTGTC TTCAACTTCA GCGTTTAACA GTTGAAATAG GAAAAAGAAA
AACAGTGTGT TTTGGTGTTT CTGAGAAAAC GAAGGTTTAG ATCAGCTCTC AAATTCTGCC ATGGCCTCCA CCAGATCACT
CATTCTTTTT CTATTAATTC AATTATGCTT CTCAGTTCTA CCCCTCTCAT TCGCCCAATC TCCTGCCACG GGGTCCACCG
AAGGTTACAC TATTTATGGT CGAGTGAAGA TCCCCAGTGT GGGAACAAAA GAATATATTC TTCCAGGAAA AATTTCAAAC
GTCAAAGTCA TACTCAATGG TGGTCAAAGA GTTACTTTTC TGAGGCCAGA TGGATATTTC TCATTCCACA ATGTTCCTGC
AGGGACACAT CTAATTGAAG TAGCTGCAAT AGGTTATTTC TTTTCTCCGG TACGAGTTGA TGTAAGTGCT AGACACCATG
GCAAAATTCA GGCGGCACTG ACAGAGAATA GGAGGGGACT TAGTGAGTTT GTCTTAGAGC CATTAAGGGA TGAACAATAT
TACGAGGTTA GGGAGCCATT CTCTATTATG TCCGTTGTGA AAAGTCCAAT GGGTCTGATG GTTGGATTTA TGCTAATTGT
TGTCTTCCTC ATGCCCAAAT TGATGGAGAA CATGGATCCA GAAGAAATGA GGCGTGCACA AGAAGAAATG AGAAATCAAG
GAGTTCCATC GTTAGCAAGC TTGTTACCTG GTGCCGCAAG AAGCAACTAG GTATATATGA GTAATGGAAA ACTGGTGAGC
AAGTTGGTTG CCTCAAGCAC GAGCTGAAGA AATATGACTT CTGATTATTG GAGAATTTTC TCATGAGAAA TTGGTACTGA
GAAATCTTTC GATTATTTAT GTTGTGGATT AGCTAAAATT TGAAATTTCT AATAGTGGTT TATACGTTTG ACTTGAACGC
TCAGGAGTAG GGTTCTGCGT TGCTCTTCCC ATTTTCTTGT CAATGTTGAT ATTAGTAATA TTTAGCTCTT TTGGTTTACT
TGTAGAAGCC CTTAATTTCC ACTTTTGGTC GTTTTTCTTG AA

>Vigan.02G078600.01
ATGGCCTCCA CCAGATCACT CATTCTTTTT CTATTAATTC AATTATGCTT CTCAGTTCTA CCCCTCTCAT TCGCCCAATC
TCCTGCCACG GGGTCCACCG AAGGTTACAC TATTTATGGT CGAGTGAAGA TCCCCAGTGT GGGAACAAAA GAATATATTC
TTCCAGGAAA AATTTCAAAC GTCAAAGTCA TACTCAATGG TGGTCAAAGA GTTACTTTTC TGAGGCCAGA TGGATATTTC
TCATTCCACA ATGTTCCTGC AGGGACACAT CTAATTGAAG TAGCTGCAAT AGGTTATTTC TTTTCTCCGG TACGAGTTGA
TGTAAGTGCT AGACACCATG GCAAAATTCA GGCGGCACTG ACAGAGAATA GGAGGGGACT TAGTGAGTTT GTCTTAGAGC
CATTAAGGGA TGAACAATAT TACGAGGTTA GGGAGCCATT CTCTATTATG TCCGTTGTGA AAAGTCCAAT GGGTCTGATG
GTTGGATTTA TGCTAATTGT TGTCTTCCTC ATGCCCAAAT TGATGGAGAA CATGGATCCA GAAGAAATGA GGCGTGCACA
AGAAGAAATG AGAAATCAAG GAGTTCCATC GTTAGCAAGC TTGTTACCTG GTGCCGCAAG AAGCAACTAG 

>Vigan.02G078600.01
MASTRSLILF LLIQLCFSVL PLSFAQSPAT GSTEGYTIYG RVKIPSVGTK EYILPGKISN VKVILNGGQR VTFLRPDGYF
SFHNVPAGTH LIEVAAIGYF FSPVRVDVSA RHHGKIQAAL TENRRGLSEF VLEPLRDEQY YEVREPFSIM SVVKSPMGLM
VGFMLIVVFL MPKLMENMDP EEMRRAQEEM RNQGVPSLAS LLPGAARSN*