GBrowse Details

Vigan.02G087200.01

Basic Information:
Name: Vigan.02G087200.01
Multiple alignment
Variant Information
Position: Chr02:6862150..6865996 (+ strand)
Length: 3847
Functional Information:
Description: Similar to Uncharacterized protein. [I1K908, Glycine max]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem II (GO:0009523)
Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
Cellular Component: extrinsic to membrane (GO:0019898)
Molecular Function: calcium ion binding (GO:0005509)
InterPro: Photosystem II PsbP, oxygen evolving complex (IPR002683)
Mog1/PsbP, alpha/beta/alpha sandwich (IPR016123)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.43,4.01,14.34,19.00,3.47,3.71,2.31,6.74
Arabidopsis thaliana homolog: AT5G11450.1
Automatic updates:
Name: NM_001255651 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max psbP domain-containing protein 5, chloroplastic-like (LOC100776365), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:6862150..6862259 (+ strand)
Length: 110
Type: five_prime_UTR
Position: Chr02:6862260..6862339 (+ strand)
Length: 80
Type: CDS
Position: Chr02:6862427..6862590 (+ strand)
Length: 164
Type: CDS
Position: Chr02:6862729..6862837 (+ strand)
Length: 109
Type: CDS
Position: Chr02:6863281..6863330 (+ strand)
Length: 50
Type: CDS
Position: Chr02:6863563..6863630 (+ strand)
Length: 68
Type: CDS
Position: Chr02:6863702..6863800 (+ strand)
Length: 99
Type: CDS
Position: Chr02:6864158..6864217 (+ strand)
Length: 60
Type: CDS
Position: Chr02:6864412..6864471 (+ strand)
Length: 60
Type: CDS
Position: Chr02:6864560..6864614 (+ strand)
Length: 55
Type: CDS
Position: Chr02:6864972..6865021 (+ strand)
Length: 50
Type: CDS
Position: Chr02:6865679..6865777 (+ strand)
Length: 99
Type: CDS
Position: Chr02:6865778..6865996 (+ strand)
Length: 219
Type: three_prime_UTR


>Vigan.02G087200.01
CCGTGTGTTG CTAAGAACAT GTCAGAAGAA AAAAGTTGTA ATAAAAGGGA AGTGTTGAAA GTGAGATAAT GTTACAGTGT
GGTGGTGGAT GACACAACTG AGAGCTACCA ATGGTTTTAC CTTCTTCTTC TCTCTCCCTT TCCTTCTTCT TCCCCACTTC
TACACTTCTT CCTAATAACC TTATCTTCAG AAACAACAAC AGGGCTATCT TTAACCCACA CAATTTCCCA TTATCAAAGG
AAAGACTACG TTTTTCATGT TGTGCTCTAA AACCCACTTC GCAAAACAGG GTTTTTAGAA GGGATTTGGT GTTGTTAGGC
TTGACCTCGG TTTCTCTAAG ATGGCCACTT TCAGTGGCTC TTGCTGAAGA AGAGCCCACA ATGGCTTCGT TTTTAGATGA
AATAAACGCC TATTCTTATC TGTACCCTGT TGAGTCGCCT TCCAACAATA TTTCCCTCAA ATGGGTAGAA TCCCGAAAGC
CAGAGCGATA TTCATCAGCT GCACCACTTT CTCCTGATGC ACGCCTGCGC ATTGTGTCCG AGCGTGTAGA CTTTATTGAT
AATGTCATCA TTTCTGTCAC GATAGGTCCA CCAAATGCAA GCTATATAAA ATCAAAGGAT AAGAGTACAT GGACTGCAAA
AGATGTTGCT GATTCAGTGT TAGCTGACAG ATCTTCACTG CGAGTTACGT CAACTCAGCG TTTAGAAGAG AGTTCGGTTC
TCAATACCCA TTCTAGTGAA ATTGATGGTG AGAAGTACTG GTATTATGAA TACCTTGTTC GTAAAGCACC TTTGAGACTA
ACTGATGAAT CAAACACTTA CCGGCATTAT CTTGCTTCAA CAGCTGAAAG AGATGGTTAT TTGTACTCTA TCAGTGCTTC
AACCATCAGC CCACGGTGGG AAAAGCTGGG GCCTTTCCTT GAAAAGGCAG TGGGTTCATT TCGTCTCCTT AGTCCAACGG
AAAATTATGT TCCTCCCTAC AAAGATCCCT GGAGATTTTG GTGAAAACTC CTTTTATTTT ATCGTATTCA TGTGATTTTT
TAGGCATGAA ATTTATGTTT CATTTAATTG TTGGTCCAAA AAGGCAAATT GAAATAGATT CTCTGAAAGA GATGAGCAGA
ACATGAGGCC TTCTATTTCT GTTTTTTCTA TTCTTTTTTA TCATTCCTAA ATGTACTTTA ACATCGTTTA TTTAGCAATC
CAATTTAGAT AATAAAACAG AGG

>Vigan.02G087200.01
ATGGTTTTAC CTTCTTCTTC TCTCTCCCTT TCCTTCTTCT TCCCCACTTC TACACTTCTT CCTAATAACC TTATCTTCAG
AAACAACAAC AGGGCTATCT TTAACCCACA CAATTTCCCA TTATCAAAGG AAAGACTACG TTTTTCATGT TGTGCTCTAA
AACCCACTTC GCAAAACAGG GTTTTTAGAA GGGATTTGGT GTTGTTAGGC TTGACCTCGG TTTCTCTAAG ATGGCCACTT
TCAGTGGCTC TTGCTGAAGA AGAGCCCACA ATGGCTTCGT TTTTAGATGA AATAAACGCC TATTCTTATC TGTACCCTGT
TGAGTCGCCT TCCAACAATA TTTCCCTCAA ATGGGTAGAA TCCCGAAAGC CAGAGCGATA TTCATCAGCT GCACCACTTT
CTCCTGATGC ACGCCTGCGC ATTGTGTCCG AGCGTGTAGA CTTTATTGAT AATGTCATCA TTTCTGTCAC GATAGGTCCA
CCAAATGCAA GCTATATAAA ATCAAAGGAT AAGAGTACAT GGACTGCAAA AGATGTTGCT GATTCAGTGT TAGCTGACAG
ATCTTCACTG CGAGTTACGT CAACTCAGCG TTTAGAAGAG AGTTCGGTTC TCAATACCCA TTCTAGTGAA ATTGATGGTG
AGAAGTACTG GTATTATGAA TACCTTGTTC GTAAAGCACC TTTGAGACTA ACTGATGAAT CAAACACTTA CCGGCATTAT
CTTGCTTCAA CAGCTGAAAG AGATGGTTAT TTGTACTCTA TCAGTGCTTC AACCATCAGC CCACGGTGGG AAAAGCTGGG
GCCTTTCCTT GAAAAGGCAG TGGGTTCATT TCGTCTCCTT AGTCCAACGG AAAATTATGT TCCTCCCTAC AAAGATCCCT
GGAGATTTTG GTGA

>Vigan.02G087200.01
MVLPSSSLSL SFFFPTSTLL PNNLIFRNNN RAIFNPHNFP LSKERLRFSC CALKPTSQNR VFRRDLVLLG LTSVSLRWPL
SVALAEEEPT MASFLDEINA YSYLYPVESP SNNISLKWVE SRKPERYSSA APLSPDARLR IVSERVDFID NVIISVTIGP
PNASYIKSKD KSTWTAKDVA DSVLADRSSL RVTSTQRLEE SSVLNTHSSE IDGEKYWYYE YLVRKAPLRL TDESNTYRHY
LASTAERDGY LYSISASTIS PRWEKLGPFL EKAVGSFRLL SPTENYVPPY KDPWRFW*