GBrowse Details

Vigan.02G089800.01

Basic Information:
Name: Vigan.02G089800.01
Multiple alignment
Variant Information
Position: Chr02:7207021..7213117 (+ strand)
Length: 6097
Functional Information:
Description: Similar to COP9 signalosome complex subunit 5a. [XP_003522659.1, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: JAB/MPN domain (IPR000555)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.16,54.44,31.94,27.86,37.53,32.50,27.03,24.74
Arabidopsis thaliana homolog: AT1G22920.1, AT1G71230.1
Automatic updates:
Name: PX870747 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris COP9 signalosome complex subunit 5a-like (CSN5A) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:7207021..7207131 (+ strand)
Length: 111
Type: five_prime_UTR
Position: Chr02:7207132..7207560 (+ strand)
Length: 429
Type: CDS
Position: Chr02:7207632..7207913 (+ strand)
Length: 282
Type: CDS
Position: Chr02:7208007..7208154 (+ strand)
Length: 148
Type: CDS
Position: Chr02:7208304..7208386 (+ strand)
Length: 83
Type: CDS
Position: Chr02:7212473..7212550 (+ strand)
Length: 78
Type: CDS
Position: Chr02:7212633..7212722 (+ strand)
Length: 90
Type: CDS
Position: Chr02:7212723..7213117 (+ strand)
Length: 395
Type: three_prime_UTR


>Vigan.02G089800.01
GCAATACATG CTAATTTCAA TGAGAGCGTA AATTGGAGAG TAGAGTGACA GCAAAAGAGA GTATAGTGAA GAGAGAAAAA
AAAGCGGTTT GGTCCAACGC AAGGCAAAGA AATGGAAGGG TTGTCGTCTT CAATGGCGAT TGCGCAGAAA ACATGGGAGC
TCGAGAACAA CATCATCCCC ATGGACACTC CGGGAGCCGC CTCATCCTCC TCCGCCGCAA CTGCCACCAA CGCCGACGAC
TCTATATTCT ACTACGACGA GGCCGGGCAG AATGAGTTCC AGCGCGACAA GCCCTGGGCC AATGACCCTC ACTACTTCAA
GCGCGTCAAG ATCTCCGCAC TCGCGCTACT CAAGATGGTC GTCCACGCAC GCTCCGGCGG AACTATCGAG GTCATGGGCC
TCATGCAGGG AAAGACCGAT GCCGACGCCA TCATCGTCAT GGACGCCTTC GCTCTCCCCG TTGAAGGCAC GGAAACGCGC
GTTAATGCTC AGGCAGATGC GTACGAGTAT ATGGTCGATT ATTCCCAGAC AAATAAACAG GCTGGAAGGT TAGAGAATGT
TGTGGGATGG TATCACTCTC ATCCTGGGTA TGGGTGCTGG CTGTCGGGGA TCGATGTTTC GACGCAGATG CTGAATCAGC
AGTTTCAGGA GCCGTTTCTG GCGGTTGTGA TTGATCCCAC GAGGACTGTT TCGGCGGGGA AGGTTGAGAT TGGGGCTTTT
AGGACTTACC CCGACGGTTA TAAGCCTCCG GATGAGCCCA TTTCTGAGTA TCAAACTATC CCTCTCAATA AGATTGAGGA
CTTTGGTGTC CACTGTAAAC AGTATTATGC CTTGGATATC ACTTACTTTA AGTCATCTCT TGATTCACAT CTCTTGGATC
TTCTGTGGAA CAAGTATTGG GTGAATACAT TGTCGTCTTC TCCTCTGTTG GGTAATGGAG ATTATGTTGC TGGACAAATC
TCTGATTTAG CTGAAAAGCT AGAACAAGCA GAGAATCAGT TGGCACACTC ACGCTTTGGG CCACTAATAG CACCGACACC
TAGAAAGAAA GAGGAAGAAT CTCCTCTTGC TAAAATTACT CGTGACAGTG CTAAAATAAC TGTGGAGCAG GTGCATGGTC
TGATGTCACA GGTCATCAAG GACATTTTGT TTAACTCCGT CCATCAAGCA AATAGAAATC GCACAGAACC ATCTGGTCCT
GAACCAATGA TTGAAAGCTG ATTCTGCCTC TCCTAGACAT GCATTTATAT ATTCTTTCTT TCCTTTTTTT TTGGTTTTGC
CCTCATTATC TACCAACTCT TATACTCCAC ATAACAGTCA GTCTAGCCTT GTATTTTGCC TTTTTGCCCT CGTGCTCTGC
TTATTCGTTT TATTGCACTA GTATATTTGT TAACCATGCA CTGGAACTCA CCTAACACAA ACAAAACGTT GTCGAATACA
GTTAACAAAT ACCTTTTTAT GCCCTTTTAC TCGTACTTGC TGTCAAAGTT ATTTTTCTCG CCCTTTATCG TACGGACCAA
ATTCTGCGGG TTGTGATTGA TGCAGTCTTT GTCTTTACCA CAAATAGATG TTACTGAATT CATAATTATT TATATAAAAT
AGTTGGAATT TACAAA

>Vigan.02G089800.01
ATGGAAGGGT TGTCGTCTTC AATGGCGATT GCGCAGAAAA CATGGGAGCT CGAGAACAAC ATCATCCCCA TGGACACTCC
GGGAGCCGCC TCATCCTCCT CCGCCGCAAC TGCCACCAAC GCCGACGACT CTATATTCTA CTACGACGAG GCCGGGCAGA
ATGAGTTCCA GCGCGACAAG CCCTGGGCCA ATGACCCTCA CTACTTCAAG CGCGTCAAGA TCTCCGCACT CGCGCTACTC
AAGATGGTCG TCCACGCACG CTCCGGCGGA ACTATCGAGG TCATGGGCCT CATGCAGGGA AAGACCGATG CCGACGCCAT
CATCGTCATG GACGCCTTCG CTCTCCCCGT TGAAGGCACG GAAACGCGCG TTAATGCTCA GGCAGATGCG TACGAGTATA
TGGTCGATTA TTCCCAGACA AATAAACAGG CTGGAAGGTT AGAGAATGTT GTGGGATGGT ATCACTCTCA TCCTGGGTAT
GGGTGCTGGC TGTCGGGGAT CGATGTTTCG ACGCAGATGC TGAATCAGCA GTTTCAGGAG CCGTTTCTGG CGGTTGTGAT
TGATCCCACG AGGACTGTTT CGGCGGGGAA GGTTGAGATT GGGGCTTTTA GGACTTACCC CGACGGTTAT AAGCCTCCGG
ATGAGCCCAT TTCTGAGTAT CAAACTATCC CTCTCAATAA GATTGAGGAC TTTGGTGTCC ACTGTAAACA GTATTATGCC
TTGGATATCA CTTACTTTAA GTCATCTCTT GATTCACATC TCTTGGATCT TCTGTGGAAC AAGTATTGGG TGAATACATT
GTCGTCTTCT CCTCTGTTGG GTAATGGAGA TTATGTTGCT GGACAAATCT CTGATTTAGC TGAAAAGCTA GAACAAGCAG
AGAATCAGTT GGCACACTCA CGCTTTGGGC CACTAATAGC ACCGACACCT AGAAAGAAAG AGGAAGAATC TCCTCTTGCT
AAAATTACTC GTGACAGTGC TAAAATAACT GTGGAGCAGG TGCATGGTCT GATGTCACAG GTCATCAAGG ACATTTTGTT
TAACTCCGTC CATCAAGCAA ATAGAAATCG CACAGAACCA TCTGGTCCTG AACCAATGAT TGAAAGCTGA 

>Vigan.02G089800.01
MEGLSSSMAI AQKTWELENN IIPMDTPGAA SSSSAATATN ADDSIFYYDE AGQNEFQRDK PWANDPHYFK RVKISALALL
KMVVHARSGG TIEVMGLMQG KTDADAIIVM DAFALPVEGT ETRVNAQADA YEYMVDYSQT NKQAGRLENV VGWYHSHPGY
GCWLSGIDVS TQMLNQQFQE PFLAVVIDPT RTVSAGKVEI GAFRTYPDGY KPPDEPISEY QTIPLNKIED FGVHCKQYYA
LDITYFKSSL DSHLLDLLWN KYWVNTLSSS PLLGNGDYVA GQISDLAEKL EQAENQLAHS RFGPLIAPTP RKKEEESPLA
KITRDSAKIT VEQVHGLMSQ VIKDILFNSV HQANRNRTEP SGPEPMIES*