VIGGS:GBrowse

Vigan.02G093100.01

Basic Information:

Name:	Vigan.02G093100.01 Multiple alignment Variant Information
Position:	Chr02:7434343..7438253 (+ strand)
Length:	3911

Functional Information:

Description:	Similar to proteasome subunit beta type-6. [XP_003522675.1, Glycine max]
GO:	Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
	Cellular Component: proteasome core complex (GO:0005839)
	Molecular Function: endopeptidase activity (GO:0004175)
	Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro:	Peptidase T1A, proteasome beta-subunit (IPR000243)
	Proteasome, subunit alpha/beta (IPR001353)
	Proteasome beta-type subunit, conserved site (IPR016050)
	Proteasome B-type subunit (IPR023333)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:223.68,150.50,99.66,68.17,132.08,237.04,107.17,76.36
Arabidopsis thaliana homolog:	AT4G31300.2

Automatic updates:

Name:	BT051363 NCBI(nuccore)
Organism:	Medicago truncatula
Description:	UNVERIFIED: Medicago truncatula clone MTYF1_F2_F3_F41G-D-16 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249507 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305513 (LOC100305513), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:7434343..7434448 (+ strand)
Length:	106
Type:	five_prime_UTR

Position:	Chr02:7434449..7434557 (+ strand)
Length:	109
Type:	CDS

Position:	Chr02:7434736..7434812 (+ strand)
Length:	77
Type:	CDS

Position:	Chr02:7435406..7435461 (+ strand)
Length:	56
Type:	CDS

Position:	Chr02:7435590..7435662 (+ strand)
Length:	73
Type:	CDS

Position:	Chr02:7436712..7436823 (+ strand)
Length:	112
Type:	CDS

Position:	Chr02:7437241..7437314 (+ strand)
Length:	74
Type:	CDS

Position:	Chr02:7437535..7437609 (+ strand)
Length:	75
Type:	CDS

Position:	Chr02:7437778..7437903 (+ strand)
Length:	126
Type:	CDS

Position:	Chr02:7437904..7438253 (+ strand)
Length:	350
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G093100.01
TGTAAAGCAG GACCTGTTTT CTCAATTTCT TCTTATGCTT TATTAGGGCA CTCTCAACAT TTTCACTCTT CCGTTCTTCT
TGTCCTTGCT GCATCGCTGT TGAATCATGG ATCAGAAAGT CGATTTCAGC GCTCCCCATT CCATGGGAAC CACTATCATC
GGCGTTACTT ACAAAGACGG TGTCGTTTTA GGAGCCGATT CTCGAACCAG CACCGGAGTG TATGTTGCCA ACCGGGCATC
AGACAAAATT ACACAGCTCA CTGATAATGT CTATGTCTGT CGTTCTGGAT CGGCTGCAGA TTCTCAGATT GTATCTGACT
ATGTGCGTTA CTTCCTCCAT CAACACACGA TACAACTTGG ACAACCTGCA ACAGTTAAAG TTGCTGCAAA CCTTGTCCGG
CTTCTCTCAT ACAACAACAA GAATTTCTTA GAGACTGGGT TAATTGTTGG AGGTTGGGAT AAATATGAAG GTGGACAAAT
TTTTGGCGTC CCTCTGGGTG GAACAATAGT ACAGCAACCT TTTGCTATTG GAGGATCTGG CTCTAGTTAC TTGTATGGTT
TCTTTGACCA AGCCTGGAAA GAGGGAATGA GCAAGGAGGA AGCTGAGGAT TTAGTTAAAA AGGCAGTTTC ACTGGCTATT
GCTCGTGATG GTGCCAGTGG TGGGGTGGTC CGAACCGTCA TAATAAACTC AGAGGGAGTG ACCAGGAATT TCTACCCTGG
CGACCAACTT CCATTATGGC ATGAGGAACT GGAGCCCCAT AACTCTTTGC TTGACATTCT TGGTGCCCCA GAGCCGATGA
GCATGTGAAG AAGTTGCTGT GTTTCTGAAT GGATCCCGGA TAGATTATAT CTTGCCATCT CTCTTTTATG AACTGCTTAA
CGATTTGTGT AGTTGCTTAC TTTGGTTGGA TATTGTTTTT AGTCGGGTTT TATCCTTGAG TTATGTACTA TGATTAACCT
TTGTTTCGTT ATATAGCTCA CAAGTTACAT GCATACTTTC TTAAATTGAT ATTGCAAACA AAACAACTAT CAACTCATGT
TTTAAACTTT TGTTGGTCCT GCTAGTTAGT AGTATAAAAT GGGAGAGATC TCAAGATGCA AGGCTCTATC ATCAAATTAA
AAATGGACTC TTGAATATTA GGCTAACCTT GAGACTGG

[show][hide][copy]CDS

>Vigan.02G093100.01
ATGGATCAGA AAGTCGATTT CAGCGCTCCC CATTCCATGG GAACCACTAT CATCGGCGTT ACTTACAAAG ACGGTGTCGT
TTTAGGAGCC GATTCTCGAA CCAGCACCGG AGTGTATGTT GCCAACCGGG CATCAGACAA AATTACACAG CTCACTGATA
ATGTCTATGT CTGTCGTTCT GGATCGGCTG CAGATTCTCA GATTGTATCT GACTATGTGC GTTACTTCCT CCATCAACAC
ACGATACAAC TTGGACAACC TGCAACAGTT AAAGTTGCTG CAAACCTTGT CCGGCTTCTC TCATACAACA ACAAGAATTT
CTTAGAGACT GGGTTAATTG TTGGAGGTTG GGATAAATAT GAAGGTGGAC AAATTTTTGG CGTCCCTCTG GGTGGAACAA
TAGTACAGCA ACCTTTTGCT ATTGGAGGAT CTGGCTCTAG TTACTTGTAT GGTTTCTTTG ACCAAGCCTG GAAAGAGGGA
ATGAGCAAGG AGGAAGCTGA GGATTTAGTT AAAAAGGCAG TTTCACTGGC TATTGCTCGT GATGGTGCCA GTGGTGGGGT
GGTCCGAACC GTCATAATAA ACTCAGAGGG AGTGACCAGG AATTTCTACC CTGGCGACCA ACTTCCATTA TGGCATGAGG
AACTGGAGCC CCATAACTCT TTGCTTGACA TTCTTGGTGC CCCAGAGCCG ATGAGCATGT GA

[show][hide][copy]PROTEIN

>Vigan.02G093100.01
MDQKVDFSAP HSMGTTIIGV TYKDGVVLGA DSRTSTGVYV ANRASDKITQ LTDNVYVCRS GSAADSQIVS DYVRYFLHQH
TIQLGQPATV KVAANLVRLL SYNNKNFLET GLIVGGWDKY EGGQIFGVPL GGTIVQQPFA IGGSGSSYLY GFFDQAWKEG
MSKEEAEDLV KKAVSLAIAR DGASGGVVRT VIINSEGVTR NFYPGDQLPL WHEELEPHNS LLDILGAPEP MSM*