GBrowse Details

Vigan.02G094100.01

Basic Information:
Name: Vigan.02G094100.01
Multiple alignment
Variant Information
Position: Chr02:7500694..7510887 (+ strand)
Length: 10194
Functional Information:
Description: Similar to tropomyosin-2-like. [XP_004501205.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:139.74,65.96,25.09,24.59,29.99,29.37,33.47,24.97
Arabidopsis thaliana homolog: AT4G31340.1
Automatic updates:
Name: NM_001255346 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100781922 (LOC100781922), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:7500694..7500776 (+ strand)
Length: 83
Type: five_prime_UTR
Position: Chr02:7500777..7501092 (+ strand)
Length: 316
Type: CDS
Position: Chr02:7501560..7501687 (+ strand)
Length: 128
Type: CDS
Position: Chr02:7501906..7501977 (+ strand)
Length: 72
Type: CDS
Position: Chr02:7502056..7502169 (+ strand)
Length: 114
Type: CDS
Position: Chr02:7503163..7503231 (+ strand)
Length: 69
Type: CDS
Position: Chr02:7503333..7503389 (+ strand)
Length: 57
Type: CDS
Position: Chr02:7504983..7505036 (+ strand)
Length: 54
Type: CDS
Position: Chr02:7505120..7505182 (+ strand)
Length: 63
Type: CDS
Position: Chr02:7505340..7505402 (+ strand)
Length: 63
Type: CDS
Position: Chr02:7505685..7505849 (+ strand)
Length: 165
Type: CDS
Position: Chr02:7505928..7506083 (+ strand)
Length: 156
Type: CDS
Position: Chr02:7507768..7507848 (+ strand)
Length: 81
Type: CDS
Position: Chr02:7507934..7507995 (+ strand)
Length: 62
Type: CDS
Position: Chr02:7508109..7508199 (+ strand)
Length: 91
Type: CDS
Position: Chr02:7508200..7510887 (+ strand)
Length: 2688
Type: three_prime_UTR


>Vigan.02G094100.01
CAATTGCCGA TTCAATAATA GCGTGAAGAG TGTATGGGTA TGTATCATCA ACATTCAGTA TATACTATAT AATAAAGAAA
AACATGAATA TTCAATTACT ATTTATTTCT AGAGAAAAAG AAAAGCAAAA TAGAAAAGCT TCTTGTAAAC GACGAAGGTG
TTATAAGTAT CAGAACACCG ACGAGGGTGT GTTTTTCTCC GAAGCTTTGT TGGCGGCAAA GCAAATCTGT ATTGCGATGG
CGCCCACGAA GCTCTTCTTC TTTGCGTTTT CAGTAGCCCT AATTTTCGCC ATCGTCGGGG CCGAGGCTGA TGTTTCCGTC
GAAGGAAGCG TAGCAGAGCC TGATTCCTCT GCCTTCAAGA TCCAATTAGA TCAACTCAAT TCTAAGATCC GAATTCTCGA
ATCTGAAATC AGAGAAAAGT CAGAAGAAGT GAAGAGGAAG GACGAAATTG TGGCCGGAAA AGAAAAAATT ATTCAAGATA
AATTGGTCAC CATACAGTCC CTGCAGAATG ATATTGCTTC TCTCCAGAAA AAAGGGTCAT TGGATGCTGA AGAGCAAGTC
GGAAAGGCTC ATGCACGGGC TGTTGAACTA CAGAATCAGG TGGACAAGCT TAAAGGGGAA CTAGAAACAC AAAACAGGGA
GAAAGGGAAC TGGGAAACTC GAGTGCTTGG GTTAGAGAAA AAAGTTAATG ACTTGAACTC AAAATTAGAA GATCTTCAAA
AGATAAACCA GGAGCAGAGG ACACAGATTC AGAAAACGGA GCGTGCTCTT AAAGTTACCG AGGAAGAGAT GGTGAAGGCT
AAGTTTGAGG CAGCTGTCAT AGAAGCAGAG TTGAGTTCGA CACGTGGTGC TTGGCTTCCA CCTTGGCTTG CTGTACACTA
TCTTCATAGT AAGTCTTGTG TTGAGACTCA ATGGAACAAA CATGGGAAAC CTGTTTGGGA AAAGGTTGCT CAAAAGGCCC
TAGATAAAAA GGCACAAGCT GGAAAGTGGG CTGAACCTCA TGTGGAAACC ATTAAAACTA AATGGGTCCC TGCTGTAAAA
GAACAGTGGT CTGTGGTGAA AACAAGTGCT GAACCGCATT TGCAATTATT GACCACAAAA ACTGTTGAAG GTTATGAGGC
TACCAGGAAG ACAATTTCTC CCCATTTAAG CAAGGCAAAA GAATTTGTTC ATCCTTATTA TCAGGAAGCT AGAAAGTTCA
GCAAGCCATA CATTGATCAG ATTGCTGTTG CAGCTAAACC TCATGTTGAT AAAGTACAAG TGGTTTTGAA GCCCTACACA
AATAAAGTTG TTCATAGTTA TGGGAAATTT TTGGAATCAG CTACTACATA TCATCGCCAG GTCCAAGCCA CTGTCCAAGA
GACACTGAAA AAGCATGAGC TCACCAGACC TCTTGCTACT AAAGAGTTAG AATGGTTTGC GGCCTCGGCT CTTTTGGCTC
TACCCATTAT TTTTGTGGCT AGAGTGTTTT CAGCTGTGTT CTGCGATAAA AAAGTGAATA AACCTTCTCG AAGTGGAAAT
AACCATGCAC GACGCAAAGC TAAACGAAGC CATCCAGACA AGCACACATC ATGAAGTTAG GTCCTGCCTT ATTTTTTTTT
TTTCTGGAAA GAAATTTAGG TATGCTATTC TATTCCATTA TTGATTTGAT TCGGGATATC TTCAATAACT AATATTATTT
TATGCAGGAT TCATGATGTA AAAGTGTGCT TTGATATCTT TACCATAAAC TGCTATATAT AATGCTTGTG TGGCTCAATT
TGCTTTTAAA TTTTCGTGAG GAACATTAGT TGTTACTGAG TAGGATTCAT GTGGGTTCTA CCAAACGATG TGAATTCTAC
TCCTTATTAA CAGGTCCCAC ATTATTTTTA TCCAATAATA GAGATGTTCT TTGGAAAATA ATGTTTGATT CGTAGCTGTG
TATATGGAAA TGCTTTTGTT GGTGAAGGTA AAACTTGCTT AGGTGATCTT TATACCAAAA AAGATATCAG TTTCTTGCTG
TTGGGTGTTG TTCAACAAAA TAAGTTGGCA TTTCTCACTT TTTATGAGGG TCTTCTTTCC TCTGTGATCT TATTTTCAAA
TGACTGCCTA TTTTGATTTA CTTGAAAGAT TTTAGAGCTA AAGGGGAAAT AATTTTGGGT GTCTAACTGA ACATCCATGA
AAAGCTTTGT TTAGTCTCTT ATACAAAACG AACTTGTTGG GAATTGATAT ATTTCTCAGA GGAAAGCAAA CATGGTCACT
CATTTACTAA ATTATGAGAT TAGAAAGAAG CTTCTCTAAG CTGAAAACCT GATGCCCCCT GCTATCTTAA TTGTATTTGA
TAATTCCGTC TTATTGAAGC CTTACTGTTT GAAGGTTTAT CTTCCTTCCG TATCAAATGG TTTTAACATG AGAAAAACGA
GTGTCCTATT TTCCGCCTCA GAGTCTGCTC CTATACATGT TGTGGTGTTC AACAACTTAC TGGGATATAA TACAGTTGTT
TTTTGAAGAT CAGGGTAAAA CATTAGTGTC ATAGATTGTG TAATTGGATG TAGTAATTAA GTTAATGTGC CTAGGTCATG
TTAATTTATG CGACTTCATT TTGAAGGGCC AAACCGATCT GAATGACCGC CATAATTTTT TTTCTCATTT GGAGATACAT
CACTGTAGAT TGAGTTCCTA ATCTGTGGAA CTAGTATTGA AAATACTTCT TTGGACGAAG TGTTATAAAG GAGATCTGTG
ACCTAGTAGT GGAAGCGGGA TAGGGTAGGT CAAAATGGGG GAAAAGTAGG GATTTCATCC AAGGATCAAA TAAATCCCTG
AAGGTACTTG GTCACTTTAG TTAAGGCTCT TTTGGTAAAC TTCTTTTTTC TTAATTTAAG TGAAGCAAGT GAAGAGCATC
AAGAGTCTTA GACTTTAGAA GATCCATCGT GTGCTCAAAG CTATTTGAAT TTGGTAATTG ATATGAAGAG ATCATGAGGT
CAAAAAAAAG AAAGAAAAGA AAAGTGGAAT TCACTTGATG ACATTGTGTG AGCATCGTAT TGGTAGAAAA CCACATAGTT
TATTAAAATT GGTCCTCTAC TGCTTAAGGA TGTTCGCAAG TCTTCTCAAA TTCCTTCTGT TAGATGATTT AACATCTGGA
TGGTGGTGTT GATTAGTATA TATTTATCAT ATTGAGTGTC ATAAATGGAA GCGTGAAACT ATGATACATT TCAGCGTTTC
TTATTTCCAG AAGAGGTTTA CATAATGACT TTTTGTTGAG TAAAGTTGTA AAGTGAATTG AAAATAATTG TTTGGATGAG
ACAAAAAATG CTTTAATATA TGAAAGAGAG TATTTGTGGA AAGTTAAAAG GGAGAATATG AAAGAGAGAT GGAAAATTAA
AAGGGAGAAC AGTTGTTGAA AAATAACAAC TTAAATATTT TCAAAAAAAG CCTTTTGCAG ATTTTAGTTA TTACTCAAAT
ATAAACTGAA ATTAAAATAT TTTTTTTTCA TCTCGACTGT TAAAACTTTA AAAATCCATC TTTTCCTAAA ATGTTTTCAC
TGTTTATTGT GCAGTCGAGT TTTTTACATC ATTTTGCTTT TCATTAATCA TATTGAAATT TGATGCTGAA AAAAAATACT
CTTTCTGTTT ATTGCAGATA ATTTTTCCTG TTCGCATGGG CTTATGGTGG AGGGCTATAT CTTTCATGTC ATGAGGGGTT
TTGAATATTT GCTTCTCTTT TTCTGGGTGA GGTAACTTTA GGATGTTTCA CTGTAGAGTT GGGCACACAC TATGTTTAGG
TGTTTATGTA TTGCCTTGTC ACTGTGTTAT ATTTGTTATT ATACTTGGCA CTCCCATTTC CTGTCGGTTT TGTTTTCTTA
AATTCTTGAC AGTAGAAGTG TTTCCACTTT ATGTATGTTC ATTAGAATCA GAAATTTTCT TTCTATCGCG GTTTTCTGCG
GAACGTTAAA TTTAGAAACT AATTCATGAG TTATTCTTCA TTGGAACTTA CTGACTTCCC CCCTCCTTTT CTGTGTACGT
TTCTTGAACT ATCGTTTGAA AATTATTGAA GAGTAGTTTA AATATCATAT TATGTACTCC CGTACCGAGA ACTAATTGAC
TTGTTAAATG AGGAATTTCT GTTTAAGTTA AAAGTGCTCG AGAGTTTCCC TATTGAAACT TTAATGTTTA TTCTCGTGGA
GAATCTCTCA AGGGATCTTA AAAGCGTGTG ATTTAATTTG ATTTGGTTTA GGAGAAAAAT ATCATGGTTC AGTTCACGAA
TTATGGATCA AATGGACCCG GG

>Vigan.02G094100.01
ATGAATATTC AATTACTATT TATTTCTAGA GAAAAAGAAA AGCAAAATAG AAAAGCTTCT TGTAAACGAC GAAGGTGTTA
TAAGTATCAG AACACCGACG AGGGTGTGTT TTTCTCCGAA GCTTTGTTGG CGGCAAAGCA AATCTGTATT GCGATGGCGC
CCACGAAGCT CTTCTTCTTT GCGTTTTCAG TAGCCCTAAT TTTCGCCATC GTCGGGGCCG AGGCTGATGT TTCCGTCGAA
GGAAGCGTAG CAGAGCCTGA TTCCTCTGCC TTCAAGATCC AATTAGATCA ACTCAATTCT AAGATCCGAA TTCTCGAATC
TGAAATCAGA GAAAAGTCAG AAGAAGTGAA GAGGAAGGAC GAAATTGTGG CCGGAAAAGA AAAAATTATT CAAGATAAAT
TGGTCACCAT ACAGTCCCTG CAGAATGATA TTGCTTCTCT CCAGAAAAAA GGGTCATTGG ATGCTGAAGA GCAAGTCGGA
AAGGCTCATG CACGGGCTGT TGAACTACAG AATCAGGTGG ACAAGCTTAA AGGGGAACTA GAAACACAAA ACAGGGAGAA
AGGGAACTGG GAAACTCGAG TGCTTGGGTT AGAGAAAAAA GTTAATGACT TGAACTCAAA ATTAGAAGAT CTTCAAAAGA
TAAACCAGGA GCAGAGGACA CAGATTCAGA AAACGGAGCG TGCTCTTAAA GTTACCGAGG AAGAGATGGT GAAGGCTAAG
TTTGAGGCAG CTGTCATAGA AGCAGAGTTG AGTTCGACAC GTGGTGCTTG GCTTCCACCT TGGCTTGCTG TACACTATCT
TCATAGTAAG TCTTGTGTTG AGACTCAATG GAACAAACAT GGGAAACCTG TTTGGGAAAA GGTTGCTCAA AAGGCCCTAG
ATAAAAAGGC ACAAGCTGGA AAGTGGGCTG AACCTCATGT GGAAACCATT AAAACTAAAT GGGTCCCTGC TGTAAAAGAA
CAGTGGTCTG TGGTGAAAAC AAGTGCTGAA CCGCATTTGC AATTATTGAC CACAAAAACT GTTGAAGGTT ATGAGGCTAC
CAGGAAGACA ATTTCTCCCC ATTTAAGCAA GGCAAAAGAA TTTGTTCATC CTTATTATCA GGAAGCTAGA AAGTTCAGCA
AGCCATACAT TGATCAGATT GCTGTTGCAG CTAAACCTCA TGTTGATAAA GTACAAGTGG TTTTGAAGCC CTACACAAAT
AAAGTTGTTC ATAGTTATGG GAAATTTTTG GAATCAGCTA CTACATATCA TCGCCAGGTC CAAGCCACTG TCCAAGAGAC
ACTGAAAAAG CATGAGCTCA CCAGACCTCT TGCTACTAAA GAGTTAGAAT GGTTTGCGGC CTCGGCTCTT TTGGCTCTAC
CCATTATTTT TGTGGCTAGA GTGTTTTCAG CTGTGTTCTG CGATAAAAAA GTGAATAAAC CTTCTCGAAG TGGAAATAAC
CATGCACGAC GCAAAGCTAA ACGAAGCCAT CCAGACAAGC ACACATCATG A

>Vigan.02G094100.01
MNIQLLFISR EKEKQNRKAS CKRRRCYKYQ NTDEGVFFSE ALLAAKQICI AMAPTKLFFF AFSVALIFAI VGAEADVSVE
GSVAEPDSSA FKIQLDQLNS KIRILESEIR EKSEEVKRKD EIVAGKEKII QDKLVTIQSL QNDIASLQKK GSLDAEEQVG
KAHARAVELQ NQVDKLKGEL ETQNREKGNW ETRVLGLEKK VNDLNSKLED LQKINQEQRT QIQKTERALK VTEEEMVKAK
FEAAVIEAEL SSTRGAWLPP WLAVHYLHSK SCVETQWNKH GKPVWEKVAQ KALDKKAQAG KWAEPHVETI KTKWVPAVKE
QWSVVKTSAE PHLQLLTTKT VEGYEATRKT ISPHLSKAKE FVHPYYQEAR KFSKPYIDQI AVAAKPHVDK VQVVLKPYTN
KVVHSYGKFL ESATTYHRQV QATVQETLKK HELTRPLATK ELEWFAASAL LALPIIFVAR VFSAVFCDKK VNKPSRSGNN
HARRKAKRSH PDKHTS*