VIGGS:GBrowse

Vigan.02G094900.01

Basic Information:

Name:	Vigan.02G094900.01 Multiple alignment Variant Information
Position:	Chr02:7565754..7567814 (+ strand)
Length:	2061

Functional Information:

Description:	Similar to 2-on-2 hemoglobin. [Q6QDC2, Glycine max]
GO:	Biological Process: oxygen transport (GO:0015671)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: oxygen binding (GO:0019825)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Globin, truncated bacterial-like (IPR001486)
	Globin-like (IPR009050)
	Globin, structural domain (IPR012292)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.25,0.82,1.01,1.67,277.74,4.37,38.28,3.72

Automatic updates:

Name:	NM_001250415 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 2-on-2 hemoglobin (GLB3), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:7565754..7565835 (+ strand)
Length:	82
Type:	five_prime_UTR

Position:	Chr02:7565836..7565972 (+ strand)
Length:	137
Type:	CDS

Position:	Chr02:7566057..7566187 (+ strand)
Length:	131
Type:	CDS

Position:	Chr02:7566745..7566889 (+ strand)
Length:	145
Type:	CDS

Position:	Chr02:7566959..7567064 (+ strand)
Length:	106
Type:	CDS

Position:	Chr02:7567065..7567814 (+ strand)
Length:	750
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G094900.01
CAGGGCCACA GGTTCTGATT CTGCGTGTGG GAAGAACAAC GCCTGAAAAG TTTGTTGAGA GAGAGAGATA ACTGCTTTCG
CGATGCAGAG TCTGCAGCAG AAGGCCTCTG AATGGAGTGG AGTTTCCACA GATGATGCTT TTGCTATCGA CGACGGCGAT
TTGTTTCACA CTCTTGGCCT CCAAACCTTC GTTACACTCT CTACCAATTT CTACAACAGG GTATATGATG ATGATCAAGA
CTGGTTTCGT TCAATATTTG GGAATTCAGA CAAGGAAACG GCAATTCAGA ACCAGTACGA ATTCCTCGTC CAGAGGATGG
GAGGTCCTCC TCTCTATTCT CAAAGAAGAG GGCACCCTGC TCTAATTGCT CGACATCGAC CATTTCCTGT GACACATGAA
GCTGCTGAGA GGTGGCTACA TCATATGGGA CAAGCATTGG ACAGTACCTC AGCTATAGAT GATGATTCAA AGATCAAACT
CACGAACTTT TTCAGGCACA CTGCATATTT CCTTGTGGCT GGAGTTGAGC GAAAGGATCA ACACCATCAC ACACCATGCA
AGGATGCTGC CCTGAAGCAA CACCCATGTA AAAACTTCTA GTATTTTCTT TGTACCATAT AGAGAAGGTA TCATATCAGA
TGTCAATTTT ACTGTTGACA TAAAAACTTT CAGATCATAT ATAAGGTTGA ATTTTTTTTA TATATATGCA CATGAATATT
TCCTTGTGAT GAAGTTGGGC TAAAGGATCA AAAAGCATCA CACAACATGT AAGGATACTG CCCTGAAATG TAAAAACTTA
GTATTGTGTT TGCTTTTGTG CCATATAGAG AATAAGGTTT CATATAAAAC TTTTAGTTTG TGTTTGCTTT TGTGTGTTTG
GCTGAAGAAT GCCGGCGAAC TGTGGGATAC TTTTCTATAA AATTTACAGG AGGGAAATGA AATAATCTCT ATGCCACCTA
CAAAAAATTA AAGTCACCTT ACGTTAAAAA AGAAGAAATG TTGTGTGATG CAAATACTTT ACTCCTTTAC TCCCTCTACC
CTTTACTCCT TCCATGTGTC TCTCTTCAAC AATGTGCCTC CTCCTTCACC ATGTCTCCCT ATGCATTACT TGTTGAGGCA
AATCAGAAAT GTTGTGATGC AAGCCTAATA TTATGATTCT AAGCAAAGAA GAAGACATTG AAAGTGGGTA CAGGCATCTT
TGATTCATCA TTCCGAAAGT ATTTTTTTCC TATTACCAAG ATTTGTCCAA TGCATGTATG AACATCTACC CCAAATTGGT
CAAAAAGAGG AGTATGACCC TTGAGTTGCA TATGGAAGAA GTAAAAACAG GAAAAAAACT TTCAAAATGG G

[show][hide][copy]CDS

>Vigan.02G094900.01
ATGCAGAGTC TGCAGCAGAA GGCCTCTGAA TGGAGTGGAG TTTCCACAGA TGATGCTTTT GCTATCGACG ACGGCGATTT
GTTTCACACT CTTGGCCTCC AAACCTTCGT TACACTCTCT ACCAATTTCT ACAACAGGGT ATATGATGAT GATCAAGACT
GGTTTCGTTC AATATTTGGG AATTCAGACA AGGAAACGGC AATTCAGAAC CAGTACGAAT TCCTCGTCCA GAGGATGGGA
GGTCCTCCTC TCTATTCTCA AAGAAGAGGG CACCCTGCTC TAATTGCTCG ACATCGACCA TTTCCTGTGA CACATGAAGC
TGCTGAGAGG TGGCTACATC ATATGGGACA AGCATTGGAC AGTACCTCAG CTATAGATGA TGATTCAAAG ATCAAACTCA
CGAACTTTTT CAGGCACACT GCATATTTCC TTGTGGCTGG AGTTGAGCGA AAGGATCAAC ACCATCACAC ACCATGCAAG
GATGCTGCCC TGAAGCAACA CCCATGTAAA AACTTCTAG

[show][hide][copy]PROTEIN

>Vigan.02G094900.01
MQSLQQKASE WSGVSTDDAF AIDDGDLFHT LGLQTFVTLS TNFYNRVYDD DQDWFRSIFG NSDKETAIQN QYEFLVQRMG
GPPLYSQRRG HPALIARHRP FPVTHEAAER WLHHMGQALD STSAIDDDSK IKLTNFFRHT AYFLVAGVER KDQHHHTPCK
DAALKQHPCK NF*