GBrowse Details

Vigan.02G096900.01

Basic Information:
Name: Vigan.02G096900.01
Multiple alignment
Variant Information
Position: Chr02:7830292..7835507 (+ strand)
Length: 5216
Functional Information:
Description: Similar to Uncharacterized protein. [I1K992, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
Molecular Function: aspartic-type endopeptidase activity (GO:0004190)
InterPro: Presenilin/signal peptide peptidase (IPR006639)
Peptidase A22B, signal peptide peptidase (IPR007369)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.52,17.11,33.28,21.52,67.98,79.54,54.94,27.03
Arabidopsis thaliana homolog: AT2G03120.1
Automatic updates:
Name: NM_001254180 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max minor histocompatibility antigen H13-like (LOC100807073), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:7830292..7830645 (+ strand)
Length: 354
Type: five_prime_UTR
Position: Chr02:7830646..7830685 (+ strand)
Length: 40
Type: CDS
Position: Chr02:7831011..7831126 (+ strand)
Length: 116
Type: CDS
Position: Chr02:7831210..7831361 (+ strand)
Length: 152
Type: CDS
Position: Chr02:7831468..7831553 (+ strand)
Length: 86
Type: CDS
Position: Chr02:7832145..7832272 (+ strand)
Length: 128
Type: CDS
Position: Chr02:7832517..7832567 (+ strand)
Length: 51
Type: CDS
Position: Chr02:7832942..7833028 (+ strand)
Length: 87
Type: CDS
Position: Chr02:7833160..7833229 (+ strand)
Length: 70
Type: CDS
Position: Chr02:7833994..7834130 (+ strand)
Length: 137
Type: CDS
Position: Chr02:7834327..7834404 (+ strand)
Length: 78
Type: CDS
Position: Chr02:7835078..7835152 (+ strand)
Length: 75
Type: CDS
Position: Chr02:7835153..7835507 (+ strand)
Length: 355
Type: three_prime_UTR


>Vigan.02G096900.01
TTTTGGTCCT AACCTCAGTA ACTTCTCTCT CTCATTATCA CGGTAAATCT TAAAACCCTA ATCCTTCTGC AATTCTTTTT
TATTTCCATT TTCCAAAATC AATTTCTCTC TCCCAAATCA ATTTCTCTCT CTATCTCTCT TCGATCTGCT TTGCTGTTGG
GGCCAACCGC TCCTGCAATT CCCGTTTGCG ATTGGAGGTT GCCCTCTTTC CTTTCTTTTT TTAAGATTGA TCTACGATTT
TGTTTCTTGT TTTTCAATTT TTGTGATTTG TGCTGTTTTT TAATCGCAGT GGAGGCCATT CTCGCAACCA GAGTTCATTA
GATCCAAAAT TGTTCAGAAA AGAGGTTAAG GAGGATGAAG AAAACCGAAC GAATTGCGAA TTTGGCTTTG ACAGGTTTAT
CCTTAGCACC GCTTGTTGTG AAAGTAGATC CGAATTTAAA TGTTATTTTG ACTGCTTGTC TCACCGTGTT CGTGGGATGT
TACCGCTCTG TCAAACCAAC ACCACCAACT GAGACAATGT CGAATGAACA TGCCATGCGT TTCCCCTTTG TTGGGAGTGC
GATGTTATTG TCACTGTTCT TACTCTTCAA GTTTCTATCA AAGGACCTTG TGAACACTGT ATTGACAGGC TACTTCTTTG
TACTTGGGAT TGTTGCGCTT TCGGCAACAT TATTACCGTT TATTAAACGT TTTCTGCCAA AGCATTGGAA TGAGGACGTC
ATAGTCTGGC GATTTCCATA TTTCCGATCT GTGGAGATTG AGTTTACAAG GTCACAGGTC GTTGCTGGCA TCCCTGGGAC
ATTCTTTTGT GCTTGGTATG CTTTGCGGAA GCATTGGCTG GCAAATAATA TCTTGGGTCT TGCTTTCTGT ATTCAGGGAA
TTGAAATGCT TTCTCTTGGG TCTTTCAAGA CTGGTGCTAT TCTCTTGGCT GGTCTATTTG TATATGACAT ATTCTGGGTT
TTCTTCACTC CAGTAATGGT CAGCGTTGCA AAATCATTTG ATGCTCCAAT AAAGCTTTTG TTCCCCACAG CAGATGCTGT
AAGGCCATTT TCAATGCTTG GTCTTGGTGA TATTGTTATC CCTGGTATTT TTGTAGCATT GGCTTTGCGG TTTGATGTAT
CCAGAGGAAA ACAGCCCCAA TATTTCAAAA GTGCATTTTT AGGATACACT GTTGGCTTGG TCCTTACAAT TGTTGTGATG
AACTGGTTTC AGGCTGCACA GCCTGCTCTT TTGTATATTG TACCTTCTGT AATTGGATTC TTGGCTGCTC ATTGCATATG
GAATGGTGAT GTCAAACAGT TGTTGGAGTT CGATGAGTCA AAGACTGCCA ATTCACCTCA AGAGGATGAC AAGTCCAGCA
AAAAGGTTGA ATAAGTTGAT GCATGCCCAA TACCAATACT TCCTAGTCAG AGAAGAAATA CTGTTTTTTT TTTCTTCTGA
AAACACCGTT ACATTTAAAG CTAACTTATT CAGCAGCACC TCTGTAACTG ATTGTGATTT TAAAAAAAAT GTATTAGTTT
TATCTTTCAA ATTGGCATTT TGCTTTTACT GCCTGTTTAC TTTGGGTTTC CATGGCAAAC TTTCTGTTAT CGGCACACAC
ATGCTTTTTT TTTGGTGTTT ATCTCTACCT AACTAATTTT GATGTTTATC TATATTGAAA TTGCACCCAT CACAGTCATA
ATCAGCCTAA GTTTGAAAAT GACATTTCAG TGGTGTTCTG TAAATAATT

>Vigan.02G096900.01
ATGAAGAAAA CCGAACGAAT TGCGAATTTG GCTTTGACAG GTTTATCCTT AGCACCGCTT GTTGTGAAAG TAGATCCGAA
TTTAAATGTT ATTTTGACTG CTTGTCTCAC CGTGTTCGTG GGATGTTACC GCTCTGTCAA ACCAACACCA CCAACTGAGA
CAATGTCGAA TGAACATGCC ATGCGTTTCC CCTTTGTTGG GAGTGCGATG TTATTGTCAC TGTTCTTACT CTTCAAGTTT
CTATCAAAGG ACCTTGTGAA CACTGTATTG ACAGGCTACT TCTTTGTACT TGGGATTGTT GCGCTTTCGG CAACATTATT
ACCGTTTATT AAACGTTTTC TGCCAAAGCA TTGGAATGAG GACGTCATAG TCTGGCGATT TCCATATTTC CGATCTGTGG
AGATTGAGTT TACAAGGTCA CAGGTCGTTG CTGGCATCCC TGGGACATTC TTTTGTGCTT GGTATGCTTT GCGGAAGCAT
TGGCTGGCAA ATAATATCTT GGGTCTTGCT TTCTGTATTC AGGGAATTGA AATGCTTTCT CTTGGGTCTT TCAAGACTGG
TGCTATTCTC TTGGCTGGTC TATTTGTATA TGACATATTC TGGGTTTTCT TCACTCCAGT AATGGTCAGC GTTGCAAAAT
CATTTGATGC TCCAATAAAG CTTTTGTTCC CCACAGCAGA TGCTGTAAGG CCATTTTCAA TGCTTGGTCT TGGTGATATT
GTTATCCCTG GTATTTTTGT AGCATTGGCT TTGCGGTTTG ATGTATCCAG AGGAAAACAG CCCCAATATT TCAAAAGTGC
ATTTTTAGGA TACACTGTTG GCTTGGTCCT TACAATTGTT GTGATGAACT GGTTTCAGGC TGCACAGCCT GCTCTTTTGT
ATATTGTACC TTCTGTAATT GGATTCTTGG CTGCTCATTG CATATGGAAT GGTGATGTCA AACAGTTGTT GGAGTTCGAT
GAGTCAAAGA CTGCCAATTC ACCTCAAGAG GATGACAAGT CCAGCAAAAA GGTTGAATAA 

>Vigan.02G096900.01
MKKTERIANL ALTGLSLAPL VVKVDPNLNV ILTACLTVFV GCYRSVKPTP PTETMSNEHA MRFPFVGSAM LLSLFLLFKF
LSKDLVNTVL TGYFFVLGIV ALSATLLPFI KRFLPKHWNE DVIVWRFPYF RSVEIEFTRS QVVAGIPGTF FCAWYALRKH
WLANNILGLA FCIQGIEMLS LGSFKTGAIL LAGLFVYDIF WVFFTPVMVS VAKSFDAPIK LLFPTADAVR PFSMLGLGDI
VIPGIFVALA LRFDVSRGKQ PQYFKSAFLG YTVGLVLTIV VMNWFQAAQP ALLYIVPSVI GFLAAHCIWN GDVKQLLEFD
ESKTANSPQE DDKSSKKVE*