GBrowse Details

Vigan.02G097400.01

Basic Information:
Name: Vigan.02G097400.01
Multiple alignment
Variant Information
Position: Chr02:7895123..7905040 (- strand)
Length: 9918
Functional Information:
Description: Similar to Aspartate aminotransferase. [O48548, Glycine max]
GO: Biological Process: cellular amino acid metabolic process (GO:0006520)
Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: transaminase activity (GO:0008483)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Aspartate/other aminotransferase (IPR000796)
Aminotransferases, class-I, pyridoxal-phosphate-binding site (IPR004838)
Aminotransferase, class I/classII (IPR004839)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.24,18.03,70.98,31.88,187.11,96.11,150.80,35.37
Arabidopsis thaliana homolog: AT1G62800.2, AT5G11520.1, AT5G19550.1
Automatic updates:
Name: NM_001250612 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aspartate aminotransferase glyoxysomal isozyme AAT1 precursor (AAT), mRNA.
PubMed ID: 9620268 NCBI(pubmed)
Status: Known Variant
Name: NM_001369271 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aspartate aminotransferase (LOC100804162), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:7895123..7895568 (- strand)
Length: 446
Type: three_prime_UTR
Position: Chr02:7895569..7895653 (- strand)
Length: 85
Type: CDS
Position: Chr02:7896519..7896639 (- strand)
Length: 121
Type: CDS
Position: Chr02:7896929..7897023 (- strand)
Length: 95
Type: CDS
Position: Chr02:7897413..7897534 (- strand)
Length: 122
Type: CDS
Position: Chr02:7897764..7897901 (- strand)
Length: 138
Type: CDS
Position: Chr02:7898172..7898335 (- strand)
Length: 164
Type: CDS
Position: Chr02:7898445..7898565 (- strand)
Length: 121
Type: CDS
Position: Chr02:7898656..7898755 (- strand)
Length: 100
Type: CDS
Position: Chr02:7898855..7898938 (- strand)
Length: 84
Type: CDS
Position: Chr02:7899027..7899088 (- strand)
Length: 62
Type: CDS
Position: Chr02:7904104..7904175 (- strand)
Length: 72
Type: CDS
Position: Chr02:7904620..7904826 (- strand)
Length: 207
Type: CDS
Position: Chr02:7904827..7905040 (- strand)
Length: 214
Type: five_prime_UTR


>Vigan.02G097400.01
TAATAGTAAT AGCGTAGACA AAACAAATTC ATTCTTCCAT CGTCAGATCA GAGTGAGAGA AAAATGTGAA TGAAATGAAA
TGAAATAAAC TCTGCTTCCA TTTCCAACTT TGTAATTTGT GGAGGGAATA CTTTTCTTTT ATTCATTACG CGCACGCACG
CACTTTATTA CAGGGACCAA CAAAACCCGA GAAAATAGGG AGTTTACATT CAGCATGCGC CCACCGGTTA TTCTCAAAAC
TACCTCTCTC TCTGATTCTT ATACCTCTCC CTGTGATCGC AGACTCAACA CTCTCGCCAG ACATTTCATT ACCGTTCTTC
AACCAATGGC TTCTAACGAT GGCATCTCCG CTTCGCCAAC CGCTGCTTCT GATTCCGTCT TCAACCACCT CGTTCGTGCG
CCTGAAGATC CTATCCTCGG GGTGACGGTT GCGTATAACA AAGATCCGAG TCCAGTTAAG CTCAACTTGG GCGTTGGTGC
TTACCGAACT GAGGAAGGAA AACCTCTTGT TTTGAATGTA GTGAGGAAGG TTGAGCAGCT ACTCATAAAT GACTTGTCAC
GCAATAAGGA ATATCTTCCA ATTGTTGGGC TTGCTGATTT TAATAAATTG AGTGCTAAGC TTATTTTTGG GGCTGACAGC
CCTGCTATTC AAGAGAACAG GGTTACCACT GTACAATGCT TATCTGGGAC CGGTTCATTA AGAGTTGGGG GTGAATTTTT
GGCTAAACAC TACCACCAAC GGACTATATA CTTGCCAGCA CCAACCTGGG GCAATCACCA CAAGGTTTTC AACTTAGCGG
GGTTATCTGT CAATACATAT CGCTACTATG CTCCAGCAAC ACGGGGGCTT GACTTTGAAG GACTTCTAGA AGATCTTGGT
TCTGCTCCAT CTGGATCTAT TGTTTTGCTA CATGCATGCG CACATAACCC AACTGGTGTT GATCCAACCC TCGAGCAATG
GGAGCAGATT AGGCAGCTAA TAAGATTAAA AGCTTTGTTA CCTTTCTTTG ACAGTGCTTA TCAGGGTTTT GCTAGCGGCA
GTCTAGATGC AGATGCCCAA CCTGTTCGTT TGTTTGTTGC TGATGGGGGT GAATTGCTGG TAGCACAAAG TTATGCAAAG
AATCTGGGTC TTTATGGAGA ACGTGTTGGA GCCTTAAGCA TTGTATGCAA GTCAGCTGAT GTTGCAAGCA GGGTTGAGAG
CCAGCTGAAA CTCGTGATTA GGCCCATGTA CTCGAATCCT CCCATTCACG GTGCATCCAT TGTAGCTGCC ATTCTCAAGG
ACGGAGATTT GTTCAATGAG TGGACTATCG AGTTGAAAGG AATGGCTGAT CGAATTATCA GTATGCGCCA ACAACTTTTT
GATGCTTTAC GTTCCAGAGG AACACCTGGT GATTGGAGTC ACATTATCAA ACAAATTGGC ATGTTTACTT TCACAGGATT
GAATGCTGAA CAAGTTTCCT TCATGACTAA TGAGTATCAT ATATACATGA CATCTGATGG GAGGATTAGT ATGGCCGGTC
TAAGTTCCAA AACGGTCCCA CATCTGGCTG ATGCGATCCA TGCAGCTGTA ACCGGCGGCG TCTAAAACAT GTTGCTAACT
GCAGTTTTCA ACTTTCTCCG TAGTCCCACA GGAAGACTTC CATCTTTTTG TTTAATAATT GTCAACATCA ACTATGATAC
CTTCTTTCAT GAGACTTATA GGCAATATTT ATGCATTTGA GATGCTAGCA TATGGAACTA AGTTTCGATT AGTGAAAATA
ATAATAAACT AAGTTTTGAT TAGTGAAAAT AATAATAAAC GTAATGTTGC ATGAGTAAAT ATCTCATAGG GTTAGGTTAA
GAATCAATTT TCATTGGTAT TTATTGTGGA AAAGTGGTAG TTCTATCATT CTAGGTTTTG ATGTAAAAAA GAGAGGAAAT
TTTTATAATT AGAACTATTA ATAATGGCAA ACTTTTATAA GAAGTTCATG AATCCGATTT ATACTAATAT TATGATATTA
TTTTATCATT ACAATTGATC ATGGACTCTA T

>Vigan.02G097400.01
ATGCGCCCAC CGGTTATTCT CAAAACTACC TCTCTCTCTG ATTCTTATAC CTCTCCCTGT GATCGCAGAC TCAACACTCT
CGCCAGACAT TTCATTACCG TTCTTCAACC AATGGCTTCT AACGATGGCA TCTCCGCTTC GCCAACCGCT GCTTCTGATT
CCGTCTTCAA CCACCTCGTT CGTGCGCCTG AAGATCCTAT CCTCGGGGTG ACGGTTGCGT ATAACAAAGA TCCGAGTCCA
GTTAAGCTCA ACTTGGGCGT TGGTGCTTAC CGAACTGAGG AAGGAAAACC TCTTGTTTTG AATGTAGTGA GGAAGGTTGA
GCAGCTACTC ATAAATGACT TGTCACGCAA TAAGGAATAT CTTCCAATTG TTGGGCTTGC TGATTTTAAT AAATTGAGTG
CTAAGCTTAT TTTTGGGGCT GACAGCCCTG CTATTCAAGA GAACAGGGTT ACCACTGTAC AATGCTTATC TGGGACCGGT
TCATTAAGAG TTGGGGGTGA ATTTTTGGCT AAACACTACC ACCAACGGAC TATATACTTG CCAGCACCAA CCTGGGGCAA
TCACCACAAG GTTTTCAACT TAGCGGGGTT ATCTGTCAAT ACATATCGCT ACTATGCTCC AGCAACACGG GGGCTTGACT
TTGAAGGACT TCTAGAAGAT CTTGGTTCTG CTCCATCTGG ATCTATTGTT TTGCTACATG CATGCGCACA TAACCCAACT
GGTGTTGATC CAACCCTCGA GCAATGGGAG CAGATTAGGC AGCTAATAAG ATTAAAAGCT TTGTTACCTT TCTTTGACAG
TGCTTATCAG GGTTTTGCTA GCGGCAGTCT AGATGCAGAT GCCCAACCTG TTCGTTTGTT TGTTGCTGAT GGGGGTGAAT
TGCTGGTAGC ACAAAGTTAT GCAAAGAATC TGGGTCTTTA TGGAGAACGT GTTGGAGCCT TAAGCATTGT ATGCAAGTCA
GCTGATGTTG CAAGCAGGGT TGAGAGCCAG CTGAAACTCG TGATTAGGCC CATGTACTCG AATCCTCCCA TTCACGGTGC
ATCCATTGTA GCTGCCATTC TCAAGGACGG AGATTTGTTC AATGAGTGGA CTATCGAGTT GAAAGGAATG GCTGATCGAA
TTATCAGTAT GCGCCAACAA CTTTTTGATG CTTTACGTTC CAGAGGAACA CCTGGTGATT GGAGTCACAT TATCAAACAA
ATTGGCATGT TTACTTTCAC AGGATTGAAT GCTGAACAAG TTTCCTTCAT GACTAATGAG TATCATATAT ACATGACATC
TGATGGGAGG ATTAGTATGG CCGGTCTAAG TTCCAAAACG GTCCCACATC TGGCTGATGC GATCCATGCA GCTGTAACCG
GCGGCGTCTA A

>Vigan.02G097400.01
MRPPVILKTT SLSDSYTSPC DRRLNTLARH FITVLQPMAS NDGISASPTA ASDSVFNHLV RAPEDPILGV TVAYNKDPSP
VKLNLGVGAY RTEEGKPLVL NVVRKVEQLL INDLSRNKEY LPIVGLADFN KLSAKLIFGA DSPAIQENRV TTVQCLSGTG
SLRVGGEFLA KHYHQRTIYL PAPTWGNHHK VFNLAGLSVN TYRYYAPATR GLDFEGLLED LGSAPSGSIV LLHACAHNPT
GVDPTLEQWE QIRQLIRLKA LLPFFDSAYQ GFASGSLDAD AQPVRLFVAD GGELLVAQSY AKNLGLYGER VGALSIVCKS
ADVASRVESQ LKLVIRPMYS NPPIHGASIV AAILKDGDLF NEWTIELKGM ADRIISMRQQ LFDALRSRGT PGDWSHIIKQ
IGMFTFTGLN AEQVSFMTNE YHIYMTSDGR ISMAGLSSKT VPHLADAIHA AVTGGV*