GBrowse Details

Vigan.02G101200.01

Basic Information:
Name: Vigan.02G101200.01
Multiple alignment
Variant Information
Position: Chr02:8271669..8274765 (+ strand)
Length: 3097
Functional Information:
Description: Similar to Uncharacterized protein. [I1JUV6, Glycine max]
InterPro: Carotenoid oxygenase (IPR004294)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.64,0.30,0.06,0.05,1.50,0.31,2.23,7.10
Arabidopsis thaliana homolog: AT4G32810.1
Automatic updates:
Name: NM_001255786 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carotenoid cleavage dioxygenase (CCD8), mRNA.
PubMed ID: 29268717 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:8271669..8271705 (+ strand)
Length: 37
Type: five_prime_UTR
Position: Chr02:8271706..8272044 (+ strand)
Length: 339
Type: CDS
Position: Chr02:8272746..8273489 (+ strand)
Length: 744
Type: CDS
Position: Chr02:8273589..8273782 (+ strand)
Length: 194
Type: CDS
Position: Chr02:8273877..8274066 (+ strand)
Length: 190
Type: CDS
Position: Chr02:8274161..8274263 (+ strand)
Length: 103
Type: CDS
Position: Chr02:8274376..8274521 (+ strand)
Length: 146
Type: CDS
Position: Chr02:8274522..8274765 (+ strand)
Length: 244
Type: three_prime_UTR


>Vigan.02G101200.01
ACCCAAACCC TTCAATTTTC TTCTTTTTTC CATTTCCATG GCTTTCACAA CCATGCCTTT CACAACCATG CCTTCTTCAC
TCACAAACTC CACTTCTTCC CCAACTATGC TTCTTCCTCC CATCTCTCAT CATAACAATC ATATTTTACC TCCAAATAAA
CTCATCGTCA ATAAACCCAA ACGCAAACTC CTACACTTAA CCGTTGCAAA TGTTGCAAGT CCTTCATTAC CCATGATTAC
CCCACCAACA CCGGAGGAAC AACGCTCAGG AACCACCGCC GGCCGCCACC ACCACCACCA TGTTGCATGG ACTAGTATCT
CGCAGGAGAG CTGGGAAGGA GAGTTACAAG TTGAAGGGCA TATACCACCA TGGCTGAATG GAACGTACCT GAGGAATGGG
CCTGGGATGT GGCACATAGG AGACTATGAC TTCCGACACC TCTTCGACGG TTACGCCACG GTGGTGAAGC TACGACTCCA
GGAAGGCCGG TTATTCGCCG GCCACCGTCA ACTTGAATCG GAGGCGTACC GAGCGGCGAA GAAGAATCAG AAGATATGCT
ACCGGGAGTT TTCGGAAGTG CCAAAGGCGG CGAATTTCCT GGCGTATGTG GGGGAGCTGG CGAGCCTGTT CTCCGGCGCG
TCGCTGACGG ACAACGCGAA CACCGGGGTG GTGAAGCTTG GCGACGGGAG GGTGGTGTGT CTGACGGAGA CGCAGAAGGG
GTCGATTGTG ATTGACCCTG AGACGCTGGA AACGGTGGGG AAGTTCGAGT ACAGTGACTC GTTGGGGGGT CTGATTCACT
CTGCGCACCC CGTTGTGACG GATAAGGAGT TTGTGACGTT GTTGCCGGAT TTGGTGAGAG CAGGGTACCT TGTGGTGAGG
ATGGAGCCCG GTACCAATGA GAGGAGGGTA ATTGGGCGGG TCAATTGCCG GGGCGGGTCT TCACCCGGCT GGGTTCACTC
TTTTCCTGTC ACCGAACACT ATGTTGTTGT GCCCGAAATG CCGTTGAGGT ACTGTGCTCA GAATCTGCTC AAGGCTGAGC
CTACTCCTTT GTACAAGTTT GAGTGGCACC CTCAGTCTAA AGCTTTTATG CATGTCATGT GCAAGACCAG TGGAAATATT
GTGGCAAGTG TGGAAGTACC TCTGTTTGTT ACTTTCCATT TCATTAATGC TTATGAGGAG GAAGACGAAG ATGGGAGGGT
GACGGCCATT ATTGCCGACT GTTGTGAGCA TAATTCGGAT CCTACCATTC TTGATAGACT TAGGTTACAG AACCTTCGTT
CTTTTAATGG TGAAGATGTT CTACCCGATG CTAGGGTTGG ACGGTTCAGA ATACCACTGG ATGGAAGTCC ATATGGAGAA
CTAGATGCAG CATTGGACCC AAATGAACAT GGGAAAGGCA TGGACATGTG CAGCATAAAC CCTAATAATC TAGGAAAGAA
ATACAGATAT GCGTATGCTT GTGGAGCACA GCGACCTTGT AACTTTCCCA ACACACTCAC CAAGCTTGAT TTAGAATTGA
AAAAGGCTAC GAACTGGCAT GAAGAAGGTG CCGTACCCTC AGAACCATTC TTTGTTGCAC GACCAGGAGC AACAGAGGAA
GATGATGGCG TGGTAATCTC CATTGTCAGC GAGAAAAATG GAGAAGGGTA TGCGTTGCTG TTGGATGGTT CCACTTTTGA
AGAGATTGCT AGGGCCAAGT TCCCTTATGG ACTTCCCTAT GGGTTGCATG GATGCTGGGT TCCAAAGGAG TAACAGCATC
ACTGAATATT ATTTAGTAAT ATAAAATCTG CTCAGAGAAA ATGACGCAAC TGAAAGCAGT ACACCTATAC AATATATTAT
GCAACTATAC TGGGTACAAG GGATACTGAT CCTTAAGCGT GTAATATTAT TGTATGTGTA TGATAAGGTC GCAATTATGG
ATTCGTCCTC TTCCCCTCAG CATTTTGTAC ATTGTACTGC ATGTATTATA TCAATGAGTA ATCTCATTTT TTTCTCA

>Vigan.02G101200.01
ATGGCTTTCA CAACCATGCC TTTCACAACC ATGCCTTCTT CACTCACAAA CTCCACTTCT TCCCCAACTA TGCTTCTTCC
TCCCATCTCT CATCATAACA ATCATATTTT ACCTCCAAAT AAACTCATCG TCAATAAACC CAAACGCAAA CTCCTACACT
TAACCGTTGC AAATGTTGCA AGTCCTTCAT TACCCATGAT TACCCCACCA ACACCGGAGG AACAACGCTC AGGAACCACC
GCCGGCCGCC ACCACCACCA CCATGTTGCA TGGACTAGTA TCTCGCAGGA GAGCTGGGAA GGAGAGTTAC AAGTTGAAGG
GCATATACCA CCATGGCTGA ATGGAACGTA CCTGAGGAAT GGGCCTGGGA TGTGGCACAT AGGAGACTAT GACTTCCGAC
ACCTCTTCGA CGGTTACGCC ACGGTGGTGA AGCTACGACT CCAGGAAGGC CGGTTATTCG CCGGCCACCG TCAACTTGAA
TCGGAGGCGT ACCGAGCGGC GAAGAAGAAT CAGAAGATAT GCTACCGGGA GTTTTCGGAA GTGCCAAAGG CGGCGAATTT
CCTGGCGTAT GTGGGGGAGC TGGCGAGCCT GTTCTCCGGC GCGTCGCTGA CGGACAACGC GAACACCGGG GTGGTGAAGC
TTGGCGACGG GAGGGTGGTG TGTCTGACGG AGACGCAGAA GGGGTCGATT GTGATTGACC CTGAGACGCT GGAAACGGTG
GGGAAGTTCG AGTACAGTGA CTCGTTGGGG GGTCTGATTC ACTCTGCGCA CCCCGTTGTG ACGGATAAGG AGTTTGTGAC
GTTGTTGCCG GATTTGGTGA GAGCAGGGTA CCTTGTGGTG AGGATGGAGC CCGGTACCAA TGAGAGGAGG GTAATTGGGC
GGGTCAATTG CCGGGGCGGG TCTTCACCCG GCTGGGTTCA CTCTTTTCCT GTCACCGAAC ACTATGTTGT TGTGCCCGAA
ATGCCGTTGA GGTACTGTGC TCAGAATCTG CTCAAGGCTG AGCCTACTCC TTTGTACAAG TTTGAGTGGC ACCCTCAGTC
TAAAGCTTTT ATGCATGTCA TGTGCAAGAC CAGTGGAAAT ATTGTGGCAA GTGTGGAAGT ACCTCTGTTT GTTACTTTCC
ATTTCATTAA TGCTTATGAG GAGGAAGACG AAGATGGGAG GGTGACGGCC ATTATTGCCG ACTGTTGTGA GCATAATTCG
GATCCTACCA TTCTTGATAG ACTTAGGTTA CAGAACCTTC GTTCTTTTAA TGGTGAAGAT GTTCTACCCG ATGCTAGGGT
TGGACGGTTC AGAATACCAC TGGATGGAAG TCCATATGGA GAACTAGATG CAGCATTGGA CCCAAATGAA CATGGGAAAG
GCATGGACAT GTGCAGCATA AACCCTAATA ATCTAGGAAA GAAATACAGA TATGCGTATG CTTGTGGAGC ACAGCGACCT
TGTAACTTTC CCAACACACT CACCAAGCTT GATTTAGAAT TGAAAAAGGC TACGAACTGG CATGAAGAAG GTGCCGTACC
CTCAGAACCA TTCTTTGTTG CACGACCAGG AGCAACAGAG GAAGATGATG GCGTGGTAAT CTCCATTGTC AGCGAGAAAA
ATGGAGAAGG GTATGCGTTG CTGTTGGATG GTTCCACTTT TGAAGAGATT GCTAGGGCCA AGTTCCCTTA TGGACTTCCC
TATGGGTTGC ATGGATGCTG GGTTCCAAAG GAGTAA

>Vigan.02G101200.01
MAFTTMPFTT MPSSLTNSTS SPTMLLPPIS HHNNHILPPN KLIVNKPKRK LLHLTVANVA SPSLPMITPP TPEEQRSGTT
AGRHHHHHVA WTSISQESWE GELQVEGHIP PWLNGTYLRN GPGMWHIGDY DFRHLFDGYA TVVKLRLQEG RLFAGHRQLE
SEAYRAAKKN QKICYREFSE VPKAANFLAY VGELASLFSG ASLTDNANTG VVKLGDGRVV CLTETQKGSI VIDPETLETV
GKFEYSDSLG GLIHSAHPVV TDKEFVTLLP DLVRAGYLVV RMEPGTNERR VIGRVNCRGG SSPGWVHSFP VTEHYVVVPE
MPLRYCAQNL LKAEPTPLYK FEWHPQSKAF MHVMCKTSGN IVASVEVPLF VTFHFINAYE EEDEDGRVTA IIADCCEHNS
DPTILDRLRL QNLRSFNGED VLPDARVGRF RIPLDGSPYG ELDAALDPNE HGKGMDMCSI NPNNLGKKYR YAYACGAQRP
CNFPNTLTKL DLELKKATNW HEEGAVPSEP FFVARPGATE EDDGVVISIV SEKNGEGYAL LLDGSTFEEI ARAKFPYGLP
YGLHGCWVPK E*