VIGGS:GBrowse

Vigan.02G105400.01

Basic Information:

Name:	Vigan.02G105400.01 Multiple alignment Variant Information
Position:	Chr02:8677555..8680683 (- strand)
Length:	3129

Functional Information:

Description:	Similar to Uncharacterized protein. [G7J410, Medicago truncatula]
GO:	Cellular Component: integral to membrane (GO:0016021)
InterPro:	Erg28 (IPR005352)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.29,1.48,9.87,5.28,24.13,23.67,6.71,9.43
Arabidopsis thaliana homolog:	AT1G10030.1

Automatic updates:

Name:	NM_001249372 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499807 (LOC100499807), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001250845 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305859 (LOC100305859), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:8677555..8678014 (- strand)
Length:	460
Type:	three_prime_UTR

Position:	Chr02:8678015..8678082 (- strand)
Length:	68
Type:	CDS

Position:	Chr02:8678507..8678713 (- strand)
Length:	207
Type:	CDS

Position:	Chr02:8680422..8680536 (- strand)
Length:	115
Type:	CDS

Position:	Chr02:8680537..8680683 (- strand)
Length:	147
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G105400.01
CAGAATTGAA CAGTAATTAA AACAGAACAG TGGTTTGCGT ATTCACAACC ACTTTTAGCT TGTAAGTTTT TGGGTGTTTG
AGACGGCATC GTTTTAGGGA AGTGACAGAG GAGACTGTAG AGGCGCAGTG AGAGTTCAGT GACGAGAATG AAGGCGTTGG
GATGGTGGCT GATAGCGGTG GGCACGCTTC GATTGGCTTC GGTGTGGTTC GGTTTCTTCG ACATTTGGGC TCTTCGACTC
GCCGTCTTCT CCAACACCAC AATGACTGAA GTTCATGGGC GCACATTTGG AACTTGGACA TTGTTGACCT GCACCCTTTG
CTATATTTGC GCATTCAACC TTGAAAATAA GCCTCTCTAC CTGGCTACTT TCTTGTCATT CATCTATGCA TTGGGACATT
TCTTGACAGA ATACCTAATT TATCGCACAA TGGAGATTAA GAATCTAACT ACTGTTGGCA TATTTGCAGG AACATCGATA
GTATGGATGC TGTTGCAATG GAATTCTCAC TCGAAAATCC ACTTGAAACA CTTTTAGTAA GCAAAAAGTG TTGGGGCAAA
TATACAATAG TACAATTGGT GGTATTCGAC GGTGTAAAAT ACAGGAGACA CGCAGCTTTA GATATGTTTT CCGTGTTTTA
GATTTTATTT ATCCACATTT CAAGTTGATT TTGCCACCCA TTGCAGTTTA AGAAGTCATG AATGCGGCGC TTACCTTGTT
AACCTATCCT TAAAATGCAA ATCATTATTG ACTTTGGTCC GTTTTGCACT AGTTGATATT AAGAAATGAG AACCCTGATG
TTTTAGAATT TTGAAGATGA ATTCTATTTT TCCATGTAAT CCGTATAATG ACCTTATATT GCAGAAGGGA TTGCGTCTGT
AACTAGAAGC ATGACAAATT TGCGAACATA ACTTTGAAAC ATCATATCTA GATACAAGTT AGTACAAGGT AATTTGCCTT
GACTCGTTGT TCAAAGCTCA TACGCAAAGA ATCTGAG

[show][hide][copy]CDS

>Vigan.02G105400.01
ATGAAGGCGT TGGGATGGTG GCTGATAGCG GTGGGCACGC TTCGATTGGC TTCGGTGTGG TTCGGTTTCT TCGACATTTG
GGCTCTTCGA CTCGCCGTCT TCTCCAACAC CACAATGACT GAAGTTCATG GGCGCACATT TGGAACTTGG ACATTGTTGA
CCTGCACCCT TTGCTATATT TGCGCATTCA ACCTTGAAAA TAAGCCTCTC TACCTGGCTA CTTTCTTGTC ATTCATCTAT
GCATTGGGAC ATTTCTTGAC AGAATACCTA ATTTATCGCA CAATGGAGAT TAAGAATCTA ACTACTGTTG GCATATTTGC
AGGAACATCG ATAGTATGGA TGCTGTTGCA ATGGAATTCT CACTCGAAAA TCCACTTGAA ACACTTTTAG

[show][hide][copy]PROTEIN

>Vigan.02G105400.01
MKALGWWLIA VGTLRLASVW FGFFDIWALR LAVFSNTTMT EVHGRTFGTW TLLTCTLCYI CAFNLENKPL YLATFLSFIY
ALGHFLTEYL IYRTMEIKNL TTVGIFAGTS IVWMLLQWNS HSKIHLKHF*