GBrowse Details

Vigan.02G111100.01

Basic Information:
Name: Vigan.02G111100.01
Multiple alignment
Variant Information
Position: Chr02:9280063..9283205 (+ strand)
Length: 3143
Functional Information:
Description: Similar to RING finger protein 214 isoform 1. [XP_007018191.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:20.21,10.11,17.66,14.63,18.47,12.49,16.17,13.45
Automatic updates:
Name: NM_001254543 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100790753 (LOC100790753), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:9280063..9280346 (+ strand)
Length: 284
Type: five_prime_UTR
Position: Chr02:9280347..9280559 (+ strand)
Length: 213
Type: CDS
Position: Chr02:9281173..9281263 (+ strand)
Length: 91
Type: CDS
Position: Chr02:9281360..9281520 (+ strand)
Length: 161
Type: CDS
Position: Chr02:9282190..9282217 (+ strand)
Length: 28
Type: CDS
Position: Chr02:9282412..9282520 (+ strand)
Length: 109
Type: CDS
Position: Chr02:9282760..9282841 (+ strand)
Length: 82
Type: CDS
Position: Chr02:9282842..9283205 (+ strand)
Length: 364
Type: three_prime_UTR


>Vigan.02G111100.01
GTTGTTGTAA CGCAATGAGT AGACGGAACA ATTGGAGTAC ACGAAACCCA TCTTCGTAGA ATTGTGTTGT ATTTGTATTC
AAATGGAATC TCTTCTTTGG TTTCATTGAC AAACCACGCA CGGCCCAGAA CTCCGTCGCC ATCTATCGCC GTCGTGTTCG
TCACCGTCGT GGTCGCCGCC TCCTAAAACA CGGCACAACG AATCCAAAGT AAAGACCGTG TTTGGAAGCA TTTAATGTAA
ATCCCATGGG TACCAACCCT CTCTCTCTTC ATTAAACTAC GCAAATGGAT CTCAAAGCTT CGGCGGATCC GGACCCGGAC
CCGCTTCGCG TCAAGAGGAA GACCCTTGAG GCTGTGCTCT TGCAGTGTCA GAGAGCTCTC GAATTGATCA ACGCTGCTTC
TCCTTCATCT TCTGCTTCTG CTGAAGTCGA AGAAGAGGAT TGTCTGGCTG ACAGCGAAGC TGAGGCCATT GCGTCTACCG
ATCCTCTTGA CGACCAGTTA CGTGATATGC TCAAATCAAG AGTTGAATGC CCTGCCTTTC TTCAAAAGTT GGAGTGTGCT
CAGGCATCAG TTTCGCAGAA TATATATGAA GAAGGTAATT CTTGGGATTT GGTTGGTGAA AATGATCTCT GGGAAGGCCA
ACGTGATGAC TTAGACCAAG AAGATTATGT ACTTGTTAGA CAAGAGGATG TAGTTGAGGG CATCGCATGC TTCATGGCTG
CATATTTGCT ATCAATTAAG CAGACTAAGG ATTTAACACC GATTCAACTC CAGGACGCGC TTAGCAAGAC ATTTTCAGCG
AAAAAGAAAA AGGGAAAGCT ACGAAAGGCT TGGGATGGGA GCAAAGTTAT TTATAACGTT GCATCGTGGG GTGCTACGGC
CATAGGGATA TATCAAAACC CTGTTATTAT TTCGGCCGCA ACTAAAGCAT TCTGGACTTC TTGCCATGTT ATATCGAAGC
TTCTCTGATT TGCTGCTTGG AGCAAAGTTG TGATGTAGTT AGTAATTTAA CTCTTGTTCC GCTGCAATTT ACTTGACGCC
TCGGATTTCA AAATCAATTT CTTTGCACAA CAAATCAATT GATTTAGAAG AGTTTGACAT TGTAAATATC AATTGATTTC
AACAGAGTTT GACATTGTAA ATATTTCTAT TCAAATGTTT CCGCCTGTGT TCAAAACCTT AAACATAATC TCCCTTCACG
TCTGAGAGCC TGGCTTATGT TTTTTCTCGC CGATTTTAAT TGAACTCATT CCATATTCCG CCACACCTTA TTTTGTGCTT
TAACTTCGTT GAACTGATGT GATTCTGGCA CTCTATAGAA CGTTATTCGT AA

>Vigan.02G111100.01
ATGGATCTCA AAGCTTCGGC GGATCCGGAC CCGGACCCGC TTCGCGTCAA GAGGAAGACC CTTGAGGCTG TGCTCTTGCA
GTGTCAGAGA GCTCTCGAAT TGATCAACGC TGCTTCTCCT TCATCTTCTG CTTCTGCTGA AGTCGAAGAA GAGGATTGTC
TGGCTGACAG CGAAGCTGAG GCCATTGCGT CTACCGATCC TCTTGACGAC CAGTTACGTG ATATGCTCAA ATCAAGAGTT
GAATGCCCTG CCTTTCTTCA AAAGTTGGAG TGTGCTCAGG CATCAGTTTC GCAGAATATA TATGAAGAAG GTAATTCTTG
GGATTTGGTT GGTGAAAATG ATCTCTGGGA AGGCCAACGT GATGACTTAG ACCAAGAAGA TTATGTACTT GTTAGACAAG
AGGATGTAGT TGAGGGCATC GCATGCTTCA TGGCTGCATA TTTGCTATCA ATTAAGCAGA CTAAGGATTT AACACCGATT
CAACTCCAGG ACGCGCTTAG CAAGACATTT TCAGCGAAAA AGAAAAAGGG AAAGCTACGA AAGGCTTGGG ATGGGAGCAA
AGTTATTTAT AACGTTGCAT CGTGGGGTGC TACGGCCATA GGGATATATC AAAACCCTGT TATTATTTCG GCCGCAACTA
AAGCATTCTG GACTTCTTGC CATGTTATAT CGAAGCTTCT CTGA

>Vigan.02G111100.01
MDLKASADPD PDPLRVKRKT LEAVLLQCQR ALELINAASP SSSASAEVEE EDCLADSEAE AIASTDPLDD QLRDMLKSRV
ECPAFLQKLE CAQASVSQNI YEEGNSWDLV GENDLWEGQR DDLDQEDYVL VRQEDVVEGI ACFMAAYLLS IKQTKDLTPI
QLQDALSKTF SAKKKKGKLR KAWDGSKVIY NVASWGATAI GIYQNPVIIS AATKAFWTSC HVISKLL*