GBrowse Details

Vigan.02G115400.01

Basic Information:
Name: Vigan.02G115400.01
Multiple alignment
Variant Information
Position: Chr02:9701821..9708021 (+ strand)
Length: 6201
Functional Information:
Description: Similar to Uncharacterized protein. [I1JV87, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Zinc finger, GATA-type (IPR000679)
Tify (IPR010399)
CCT domain (IPR010402)
Zinc finger, NHR/GATA-type (IPR013088)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.73,20.61,6.45,25.35,9.56,3.78,13.79,12.00
Automatic updates:
Name: NM_001255457 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GATA transcription factor 24-like (LOC100784257), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:9701821..9702252 (+ strand)
Length: 432
Type: five_prime_UTR
Position: Chr02:9702253..9702507 (+ strand)
Length: 255
Type: CDS
Position: Chr02:9703854..9703940 (+ strand)
Length: 87
Type: CDS
Position: Chr02:9704022..9704155 (+ strand)
Length: 134
Type: CDS
Position: Chr02:9704328..9704438 (+ strand)
Length: 111
Type: CDS
Position: Chr02:9704665..9704776 (+ strand)
Length: 112
Type: CDS
Position: Chr02:9705261..9705323 (+ strand)
Length: 63
Type: CDS
Position: Chr02:9706696..9706764 (+ strand)
Length: 69
Type: CDS
Position: Chr02:9706848..9706922 (+ strand)
Length: 75
Type: CDS
Position: Chr02:9707043..9707126 (+ strand)
Length: 84
Type: CDS
Position: Chr02:9707307..9707372 (+ strand)
Length: 66
Type: CDS
Position: Chr02:9707373..9708021 (+ strand)
Length: 649
Type: three_prime_UTR


>Vigan.02G115400.01
TATTATTTGA GCAATTATTA AGTGCCTAAC CTATTGTCTA TGAATGAGTA GAGGTGACGT GAGATGGGAG CTACACTGCT
CTGCGAACCG TTAACTCGAG AAGAAGTACC TACACCCTAC AACCGTACGC CTTCCCACAA CGGATAACTA ACTACAACTT
TCATTTCATC TTTTCTTATA TACTTACTCT CTTCAACAAA CAATAACAAC AACACCACAC ACGCTGACGC CGTCAAACCA
AATTTCACTC TCCTTTTCAG TGCGTGCCTT TCACCAAACA CGCCCTTTCT TCTCCTCTCT CTGTCTCTCT CTCTCCAGAT
CTTTGCTCTC TCCATTTTTC TGTCCTTCTT CCTAACTCAA TTTCCCTCAC GTAAACCATG CTCCACCGCT TCACAAATTA
GGGTTTCTGC TGTCCGACAC GTGGGGGAAT CGATGGCGTC ACTCAATCCG CAGCCTCTGC AGTTCCAGCA CCCTGCGATA
CCCGTCGGCG ACGACGGTGA CAGTGACGCC GCTGATGATG ATGCTATGGA TGAGTTGGAG GATGCGCATG TTACTTCAGT
GAACGTCGTT GCTAATGCTG CCAGTGCCTA CCAAGAACCG CTGCCTGCTA TGCCTTCCAG AACTAGCGAG CTCACTCTTT
CTTTCGAGGG TGAGGTTTAT GTCTTTCCCG CAGTCACTCC TCAGAAGGTT CAAGCCGTCT TGCTGCTTTT GGGAGGACGT
GATGTGCACG CAGGTGTGCC TGCTGTTGAA CTACCATTTG ATCAAAGTAA CAGGGGTATG GGTGATACTC CGAAGCTTTC
GAACCTTTCA CGAAGAATAG CATCCTTGGT CAGATTCCGC GAGAAACGAA AGGAAAGATG TTTTGACAAG AAAATTAGGT
ATACTGTGAG AAAAGAGGTG GCACAGAGGA TGCATAGGAA GAATGGGCAG TTTGCATCCT TGAAAGAAAG CCCAGGTTCA
TCTAACTGGG ATTCTGCCCG GAGTTCTGCT CAAGATGGCA CTTCTCATTC TGAATCTGTA CGCAGATGTC ACCATTGTGG
TGTCACTGAA AATAATACTC CTGCAATGCG TCGGGGGCCA GCTGGACCAA GGACTTTATG TAATGCATGC GGCCTTATGT
GGGCAAACAA GGGCACACTC AGAGATCTCA GCAAGGGAGG AAGAAATCTT TCTGTTGTTG AGCAAAGTGA TCTGGATATT
CCTATTGATG TCAAGCCTAC TTCTGTTATT GAAAGAGAAT TGTCCGGCAT CCATGATGAG CAAGGTAGTT CTGAAGATCC
GTCCAAGTCC AACACAGGTG ATGGCTCTAG TGGTCATGCA GTAAACCCTA GTGATGAGGA ATTGCCTGAA ACTGCAGACC
ACTTTACGAA TGCTCCGCCA TTAGTAGGAC TTGTTCATTC TTCAAGGAAT GACACTGAAC AGGAACCTCT GGTTGAACTT
TCTAATCCTT CAGATACAGA CATTGACATT CCAGGAAACT TTGATTAGAA GGTACTAAGT GATTCATTAC GTTGGGGGGT
TTTATATAAT GGTCCCTCTG TAGTATATTG TTGATGAGAT CTAGAAGCAG TGATACATAC CAGAAATAAT TAGGAAGTTC
GGGGTTATGA CTAATTGTAG CCCTCGGAAA GGGGAAACTG AAATGATTAC GGATTAGCAA ATGTCAAGAA GCTCTGCTAT
TCCGGCCTAA CATTGGGTAG TCTGTGACAT TGATGCTGGT ATAGGTGCCA AACATTGTTT GTGTATATGT TATAATGTGA
TTTTCCTTCA GTGTTTATAT AATAAAATAT TCATTAGTCA GGCCTGTGTT AATAAAATTG CTCTCTACAT GCTCCTGACT
ATAATAATTT CATTGAGATC AAAGCTCTGC AACCCTGATT TTAGAGATGA AATTTCGGTG ATATGGTCTG CCACTCAAGA
ATGGGTATTT GAACGTCAAC GCAGCGGTGT GCTAATTAGG ACCTTCAGGC AAGTTTAGGT TTGTGATGTC GACTCTTGGT
GAGACCATTT GAATGTTATA ATTAGCACAG ATAGACTTGT TCCAGATGTA CATATACATA TAAAATAAAT ATTAATCATC
GTCTTCTCAA TGTTCTTCCA GACACATGTT ATCAATATTG CCACTGCTGT CATCTGC

>Vigan.02G115400.01
ATGGCGTCAC TCAATCCGCA GCCTCTGCAG TTCCAGCACC CTGCGATACC CGTCGGCGAC GACGGTGACA GTGACGCCGC
TGATGATGAT GCTATGGATG AGTTGGAGGA TGCGCATGTT ACTTCAGTGA ACGTCGTTGC TAATGCTGCC AGTGCCTACC
AAGAACCGCT GCCTGCTATG CCTTCCAGAA CTAGCGAGCT CACTCTTTCT TTCGAGGGTG AGGTTTATGT CTTTCCCGCA
GTCACTCCTC AGAAGGTTCA AGCCGTCTTG CTGCTTTTGG GAGGACGTGA TGTGCACGCA GGTGTGCCTG CTGTTGAACT
ACCATTTGAT CAAAGTAACA GGGGTATGGG TGATACTCCG AAGCTTTCGA ACCTTTCACG AAGAATAGCA TCCTTGGTCA
GATTCCGCGA GAAACGAAAG GAAAGATGTT TTGACAAGAA AATTAGGTAT ACTGTGAGAA AAGAGGTGGC ACAGAGGATG
CATAGGAAGA ATGGGCAGTT TGCATCCTTG AAAGAAAGCC CAGGTTCATC TAACTGGGAT TCTGCCCGGA GTTCTGCTCA
AGATGGCACT TCTCATTCTG AATCTGTACG CAGATGTCAC CATTGTGGTG TCACTGAAAA TAATACTCCT GCAATGCGTC
GGGGGCCAGC TGGACCAAGG ACTTTATGTA ATGCATGCGG CCTTATGTGG GCAAACAAGG GCACACTCAG AGATCTCAGC
AAGGGAGGAA GAAATCTTTC TGTTGTTGAG CAAAGTGATC TGGATATTCC TATTGATGTC AAGCCTACTT CTGTTATTGA
AAGAGAATTG TCCGGCATCC ATGATGAGCA AGGTAGTTCT GAAGATCCGT CCAAGTCCAA CACAGGTGAT GGCTCTAGTG
GTCATGCAGT AAACCCTAGT GATGAGGAAT TGCCTGAAAC TGCAGACCAC TTTACGAATG CTCCGCCATT AGTAGGACTT
GTTCATTCTT CAAGGAATGA CACTGAACAG GAACCTCTGG TTGAACTTTC TAATCCTTCA GATACAGACA TTGACATTCC
AGGAAACTTT GATTAG

>Vigan.02G115400.01
MASLNPQPLQ FQHPAIPVGD DGDSDAADDD AMDELEDAHV TSVNVVANAA SAYQEPLPAM PSRTSELTLS FEGEVYVFPA
VTPQKVQAVL LLLGGRDVHA GVPAVELPFD QSNRGMGDTP KLSNLSRRIA SLVRFREKRK ERCFDKKIRY TVRKEVAQRM
HRKNGQFASL KESPGSSNWD SARSSAQDGT SHSESVRRCH HCGVTENNTP AMRRGPAGPR TLCNACGLMW ANKGTLRDLS
KGGRNLSVVE QSDLDIPIDV KPTSVIEREL SGIHDEQGSS EDPSKSNTGD GSSGHAVNPS DEELPETADH FTNAPPLVGL
VHSSRNDTEQ EPLVELSNPS DTDIDIPGNF D*