GBrowse Details

Vigan.02G119100.01

Basic Information:
Name: Vigan.02G119100.01
Multiple alignment
Variant Information
Position: Chr02:10118960..10123515 (- strand)
Length: 4556
Functional Information:
Description: Similar to Uncharacterized protein. [K7KUA8, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.02,8.80,1.06,0.47,2.44,2.97,3.19
Arabidopsis thaliana homolog: AT1G22330.1
Automatic updates:
Name: NM_001255766 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition domain-containing protein (LOC100811977), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:10118960..10118994 (- strand)
Length: 35
Type: three_prime_UTR
Position: Chr02:10118995..10119071 (- strand)
Length: 77
Type: CDS
Position: Chr02:10120057..10120312 (- strand)
Length: 256
Type: CDS
Position: Chr02:10120437..10120476 (- strand)
Length: 40
Type: CDS
Position: Chr02:10122072..10122180 (- strand)
Length: 109
Type: CDS
Position: Chr02:10122446..10122569 (- strand)
Length: 124
Type: CDS
Position: Chr02:10122670..10122918 (- strand)
Length: 249
Type: CDS
Position: Chr02:10122919..10123515 (- strand)
Length: 597
Type: five_prime_UTR


>Vigan.02G119100.01
ATTGAATTAT GGCGAGAGGG TCCGTATCTC CTTTTTATTT TCAGTTAAAG GGTAATTTAA AAGACCGTAC TGAAGGAATG
GTTGTAAATG TTTTCAAGGA GACAGAAAAA AGAAAGGAAG TTTGGTAAAT GTGGTTGAGT TACAGAAAAA GCGAAGCGAA
AAATCTAACA GGGGAGAAGA AGAGAAGGAG AAGCATATTA AGGGTAGTAA GAGTGAGTAT ATTAATGCAA AGACAGTGAG
GACACACTTG ACAGTCGTAG TGAGATGGTA TATAGTAACA CAAATCCCTT GTCTTTCTTC CTTCGCTTTT TCTGCCAGCA
AGTTAGAGTT AGCACCTGTC AGATCTCTCT CTCTCACACA CCCTTTTATT CAAAATAAAT TTCTTTACTC TCCTTATATA
TTTTTGTTGC AATCAACCAA CGCCTCTGTT CCAAACAACC ATCATAAACC ACGCCCACCT TCTTCTCTCA CCCTCTTCAA
ATGCAATGAT TCCGCTGCTG CAAAATCCAA CACACTAGGG AAGCCACACA TATATACCAC AGAGCAGAAA TATTTTATGG
AACTTTGGCC CTCAGAAGAG TAGAAGAAAG AGCTTAAATG AGTGAGACAG CCAGTCTTCA TGCACAGACA AGGACACCCA
TTTCTTCTCT TGAAGCCATG GCTCATCATC ACCCGCATTA TCGGTCACCC TTCGGAGACA CTACCTTCAC CAAACTCTTC
GTCGGAGGAC TAGCCTGGGA GACTCCCACC GAAGAAATGC GCAAATATTT CCAGCAGTTC GGGGACATTC TTGAAGCTGT
CATAATCACT GACAAAAACA CCGGAAAATC CAAAGGCTAC GGTTTCGTAA CATTCTGCGA CCAAGAATCA GCAAGAAGAG
CATGTGCTGA TCCAAATCCA ATAATAGATG GCAGAAGAGC AAATTGCAAT ATTGCTTCTC TGGGAAGGAC TCGACCTTCA
CCACCTCGAG GGAGGAATAT AGTTCAAGGT GGAGGAGGAA CAACAGTACA GAGTGTTCCG GGAGCGGGAG CGCCGCCGTC
GCTGCCGCCA GCACCTGCTG TTCTGTATCC GCCATATGGC TACGCAGCCT ACACTCCTGA TTATGGATAC CACCACCAAG
CGACATTGTA CAACCCACAG ATTCAGCAAC CACAATACTA TCAACAAGTC TACGGAGCAT CATCTTCCAC CATGAGCACC
CCGTATTACT ATGGTTACTC TGTGCAAGCA CCAAGAAACA CATTTTCCTC ACCCCAGGCA AATCGTCTAT CACCTGGACC
ATCTTATCTG TACTATCCTA CACCCGTGGA AGTCTCATTC TCTGCATATC GCCCACTCCA ATCACCAGTG ACCCAAAGCT
TTCCTTCTCC AACTGATTCA CAGAGCCAGC AGCGTATCTC CTCTGAAACA GCAGCCACTT CAGAAAGTTC AAATACCCAA
GGGAAGAACT AATATATATA TATATATATA TATATATATA TATATAT

>Vigan.02G119100.01
ATGAGTGAGA CAGCCAGTCT TCATGCACAG ACAAGGACAC CCATTTCTTC TCTTGAAGCC ATGGCTCATC ATCACCCGCA
TTATCGGTCA CCCTTCGGAG ACACTACCTT CACCAAACTC TTCGTCGGAG GACTAGCCTG GGAGACTCCC ACCGAAGAAA
TGCGCAAATA TTTCCAGCAG TTCGGGGACA TTCTTGAAGC TGTCATAATC ACTGACAAAA ACACCGGAAA ATCCAAAGGC
TACGGTTTCG TAACATTCTG CGACCAAGAA TCAGCAAGAA GAGCATGTGC TGATCCAAAT CCAATAATAG ATGGCAGAAG
AGCAAATTGC AATATTGCTT CTCTGGGAAG GACTCGACCT TCACCACCTC GAGGGAGGAA TATAGTTCAA GGTGGAGGAG
GAACAACAGT ACAGAGTGTT CCGGGAGCGG GAGCGCCGCC GTCGCTGCCG CCAGCACCTG CTGTTCTGTA TCCGCCATAT
GGCTACGCAG CCTACACTCC TGATTATGGA TACCACCACC AAGCGACATT GTACAACCCA CAGATTCAGC AACCACAATA
CTATCAACAA GTCTACGGAG CATCATCTTC CACCATGAGC ACCCCGTATT ACTATGGTTA CTCTGTGCAA GCACCAAGAA
ACACATTTTC CTCACCCCAG GCAAATCGTC TATCACCTGG ACCATCTTAT CTGTACTATC CTACACCCGT GGAAGTCTCA
TTCTCTGCAT ATCGCCCACT CCAATCACCA GTGACCCAAA GCTTTCCTTC TCCAACTGAT TCACAGAGCC AGCAGCGTAT
CTCCTCTGAA ACAGCAGCCA CTTCAGAAAG TTCAAATACC CAAGGGAAGA ACTAA

>Vigan.02G119100.01
MSETASLHAQ TRTPISSLEA MAHHHPHYRS PFGDTTFTKL FVGGLAWETP TEEMRKYFQQ FGDILEAVII TDKNTGKSKG
YGFVTFCDQE SARRACADPN PIIDGRRANC NIASLGRTRP SPPRGRNIVQ GGGGTTVQSV PGAGAPPSLP PAPAVLYPPY
GYAAYTPDYG YHHQATLYNP QIQQPQYYQQ VYGASSSTMS TPYYYGYSVQ APRNTFSSPQ ANRLSPGPSY LYYPTPVEVS
FSAYRPLQSP VTQSFPSPTD SQSQQRISSE TAATSESSNT QGKN*