GBrowse Details

Vigan.02G120300.01

Basic Information:
Name: Vigan.02G120300.01
Multiple alignment
Variant Information
Position: Chr02:10266737..10267769 (+ strand)
Length: 1033
Functional Information:
Description: Similar to signal peptidase complex subunit 1. [XP_008219427.1, Prunus mume]
GO: Biological Process: signal peptide processing (GO:0006465)
Cellular Component: signal peptidase complex (GO:0005787)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: peptidase activity (GO:0008233)
InterPro: Microsomal signal peptidase 12kDa subunit (IPR009542)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.51,0.32,4.59,2.22,0.19,3.79,1.79,1.90
Arabidopsis thaliana homolog: AT1G34640.1
Automatic updates:
Name: NM_001251718 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499705 (LOC100499705), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:10266737..10266916 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr02:10266917..10267161 (+ strand)
Length: 245
Type: CDS
Position: Chr02:10267293..10267380 (+ strand)
Length: 88
Type: CDS
Position: Chr02:10267381..10267769 (+ strand)
Length: 389
Type: three_prime_UTR


>Vigan.02G120300.01
GTAGCATTTA AAGCTCGTAC GCCTAACAAA GTTTGATCAC ATTCACCATC GTGCAGTGGT GAGTGTGAGG ACTATGGACC
CATTCAACAT CATCACATCA CAAACTTCAA AATTTAATCC CAACTCTCTC CCACACACTA TCTCAAACTC ATATTGCGTT
CTCAGAACCT GCACCACATC ATGCCAAACG ACGCCGTTCT CAGAACCTGC CTTCTCTGGC TGGCCGCAGT TATTTTAGCG
GTTGGCTTAT TCACCCACTC TTTCAAGAAG ATGATGGTCA CCTACGTCTT CGGAGTTCTT GGGATTGCGG CGGTTCTCCT
TCCTGATTGG GATTACTTCA ACCGTGATTT CTCTCGTTGG ACTTACCCTG TCACTGCTGA GGAAAGGGCC AATTCTCCAC
ATGCCCAAGG ATCTGGATTT CTCAGGTTTG CTCATTCTCC TCTAAGGGTG ATTGTTTATA GTGTGGTTTA TGGATGTGCT
ATGTACAAAT GGTGGGAGTA TGTATCGAGC TAATCATTAA CAGCTTTGTT TAGCAGAAGC ACCTGAAAAT TCTTCTGAAT
CCCAATTTTA GATGTAAGCT TTACCCTTTT GTTGATTTAA TTTTTTCAGT TTTGGTGGAA TCCATAAACC GCATCAGTGA
TTGTCCAAGA GATTATTCGT TTTTATGCTA AAAATAGAAA ATCGAAAGGA ATTAATTTGT AATTTTAAAC AAGACAGGGT
TTTGGTTGTT ACTTTTGTCG TTTGGGAAAC TTTTTCGAGT CACAGTTAAA CGATGAGGAT GCACTGTACT CAAATAGAGG
CAAGGTGCGA TCGATTTTGA TATGGATGGA ACAAAGGCTT CTTGGCTTCT TCCTCTCAGC ATGTGTTTGT CAACTCCTAT
TATAGATAGT TGACTTATCT AA

>Vigan.02G120300.01
ATGCCAAACG ACGCCGTTCT CAGAACCTGC CTTCTCTGGC TGGCCGCAGT TATTTTAGCG GTTGGCTTAT TCACCCACTC
TTTCAAGAAG ATGATGGTCA CCTACGTCTT CGGAGTTCTT GGGATTGCGG CGGTTCTCCT TCCTGATTGG GATTACTTCA
ACCGTGATTT CTCTCGTTGG ACTTACCCTG TCACTGCTGA GGAAAGGGCC AATTCTCCAC ATGCCCAAGG ATCTGGATTT
CTCAGGTTTG CTCATTCTCC TCTAAGGGTG ATTGTTTATA GTGTGGTTTA TGGATGTGCT ATGTACAAAT GGTGGGAGTA
TGTATCGAGC TAA

>Vigan.02G120300.01
MPNDAVLRTC LLWLAAVILA VGLFTHSFKK MMVTYVFGVL GIAAVLLPDW DYFNRDFSRW TYPVTAEERA NSPHAQGSGF
LRFAHSPLRV IVYSVVYGCA MYKWWEYVSS *