GBrowse Details

Vigan.02G122700.01

Basic Information:
Name: Vigan.02G122700.01
Multiple alignment
Variant Information
Position: Chr02:10620911..10622738 (+ strand)
Length: 1828
Functional Information:
Description: Similar to transport and Golgi organization 2 homolog. [XP_004500613.1, Cicer arietinum]
InterPro: Protein of unknown function DUF833 (IPR008551)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,9.84,0.82,0.00,0.00,0.09,0.82
Automatic updates:
Name: NM_001254042 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ser/Thr-rich protein T10 in DGCR region-like (LOC100820362), transcript variant 1, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Name: NM_001415785 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ser/Thr-rich protein T10 in DGCR region-like (LOC100820362), transcript variant 2, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:10620911..10621065 (+ strand)
Length: 155
Type: five_prime_UTR
Position: Chr02:10621066..10621148 (+ strand)
Length: 83
Type: CDS
Position: Chr02:10621254..10621437 (+ strand)
Length: 184
Type: CDS
Position: Chr02:10621660..10621866 (+ strand)
Length: 207
Type: CDS
Position: Chr02:10621971..10622162 (+ strand)
Length: 192
Type: CDS
Position: Chr02:10622238..10622372 (+ strand)
Length: 135
Type: CDS
Position: Chr02:10622373..10622738 (+ strand)
Length: 366
Type: three_prime_UTR


>Vigan.02G122700.01
GCTTTAATGA AAAAAAAATT GGATACAAAA AATGTGCCAA CTTAGCTTGA TAGCCTATAA AGCCATTTCG TCACTCAGAA
AACTACCAAC ATACATTTGC TGTATTGCTG GAAGCTTTGT TTGGTCTGTG GTGCACCCGA CTCAACAACT GAACGATGTG
TATAGCTTTG TTTCTTTGGC AATGCCACCC ACTGTACCCT TTTCTACTTT TGAACAACAG AGATGAATAT CACAGTAGGC
CTACGAAGCC TGTGTGTTGG TGGGAAGATT GTGATATATT GGGAGGAAGA GACGAAATAG CAATGGGAAC ATGGTTGGCT
TGTTCTACGC AAGGAAGGGT GGCTTTTCTC ACCAATGTTT TGGAGCTTCA TACCCTCCCT GAGGCCAAAA GTCGTGGAGA
CCTACCCGTT CTATTTCTCA AGAGCAGCAA GCAACCGAAA GAATTTGCAG AAAGCCTGAA GTCAGAGGCT CATTATTACA
ACGGATTCAA CTTAATGTTG GTGGATATTG AGTCGAAATC AATGGTGTAC GTCTCGAACA GGCCAAAGGG ACAAGCTATT
ACCATTGAAG AGGTTGCACC AGGGCTGCAT GTACTTTCAA ACGACAAGTT AGATTCGCCG TGGCACAAGT CTCTACGGCT
TGAATTAAGT TTCAAAGAAC ACGTTGCCAA ATACGGGGAA GGCGAAATTG GCGTAAAGGA GGTGATTGAA AAGGTAATGA
AGGACAGAGT TAAAGCCGAC AAAAGCTTAC TACCTCGAAT ATGCTCACCT GATTGGGAAT TCAATCTCAG CTCCATTTTT
GTTGAAGTAG AAACGCCACT GGGTGTATAT GGAACAAGGA GTAGTGCTGC ATTGACCGTA AGATCAAGTG GGGAAGCAAG
TTTTTATGAG GTTTATCTGG ATGATGCCAA GTGGAAGGAA CATGTAATCG ATTTCCATAT TGGGAAGTTG AAGTAGAGAA
CAGTCACACG GATGAATTGG CCTGGGCAAG AGTAATATAT GACACAATTC TAGCTTTAGT ATGCTCAAGT AATGAACTCT
ATCATCATTC ATGAATGAGG AAGAATCAAA ATCAATTGAT CCAGTTTCTT CATATTTATG TAATTCATGT TTGATGAGAT
ATGCCGTGAA TAAGCACTGG TAATAGAGTG CATGCATGTA TGTGGATTAT TAGCCAATGA AATATAGTCA TTGATAACAT
ACAAAATTGC CCACATAGGA GAAAGCTGCG ACGAACCATG AATCCAATAT TCACTCACGC TGCAATAGAT GACACAATTC
CAGCTTTATG TTCATCGGCT CTAATTTTTT TCATAAAAAA AC

>Vigan.02G122700.01
ATGTGTATAG CTTTGTTTCT TTGGCAATGC CACCCACTGT ACCCTTTTCT ACTTTTGAAC AACAGAGATG AATATCACAG
TAGGCCTACG AAGCCTGTGT GTTGGTGGGA AGATTGTGAT ATATTGGGAG GAAGAGACGA AATAGCAATG GGAACATGGT
TGGCTTGTTC TACGCAAGGA AGGGTGGCTT TTCTCACCAA TGTTTTGGAG CTTCATACCC TCCCTGAGGC CAAAAGTCGT
GGAGACCTAC CCGTTCTATT TCTCAAGAGC AGCAAGCAAC CGAAAGAATT TGCAGAAAGC CTGAAGTCAG AGGCTCATTA
TTACAACGGA TTCAACTTAA TGTTGGTGGA TATTGAGTCG AAATCAATGG TGTACGTCTC GAACAGGCCA AAGGGACAAG
CTATTACCAT TGAAGAGGTT GCACCAGGGC TGCATGTACT TTCAAACGAC AAGTTAGATT CGCCGTGGCA CAAGTCTCTA
CGGCTTGAAT TAAGTTTCAA AGAACACGTT GCCAAATACG GGGAAGGCGA AATTGGCGTA AAGGAGGTGA TTGAAAAGGT
AATGAAGGAC AGAGTTAAAG CCGACAAAAG CTTACTACCT CGAATATGCT CACCTGATTG GGAATTCAAT CTCAGCTCCA
TTTTTGTTGA AGTAGAAACG CCACTGGGTG TATATGGAAC AAGGAGTAGT GCTGCATTGA CCGTAAGATC AAGTGGGGAA
GCAAGTTTTT ATGAGGTTTA TCTGGATGAT GCCAAGTGGA AGGAACATGT AATCGATTTC CATATTGGGA AGTTGAAGTA
G

>Vigan.02G122700.01
MCIALFLWQC HPLYPFLLLN NRDEYHSRPT KPVCWWEDCD ILGGRDEIAM GTWLACSTQG RVAFLTNVLE LHTLPEAKSR
GDLPVLFLKS SKQPKEFAES LKSEAHYYNG FNLMLVDIES KSMVYVSNRP KGQAITIEEV APGLHVLSND KLDSPWHKSL
RLELSFKEHV AKYGEGEIGV KEVIEKVMKD RVKADKSLLP RICSPDWEFN LSSIFVEVET PLGVYGTRSS AALTVRSSGE
ASFYEVYLDD AKWKEHVIDF HIGKLK*