GBrowse Details

Vigan.02G123600.01

Basic Information:
Name: Vigan.02G123600.01
Multiple alignment
Variant Information
Position: Chr02:10717561..10719526 (- strand)
Length: 1966
Functional Information:
Description: Similar to pollen-specific protein C13-like. [XP_004500607.1, Cicer arietinum]
InterPro: Pollen Ole e 1 allergen/extensin (IPR006041)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:187.18,187.36,411.09,101.94,247.74,1862.14,386.73,425.09
Arabidopsis thaliana homolog: AT4G08685.1
Automatic updates:
Name: NM_001250260 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative pollen Ole e 1 allergen and extensin family protein (LOC100305566), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251794 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499710 (LOC100499710), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:10717561..10717906 (- strand)
Length: 346
Type: three_prime_UTR
Position: Chr02:10717907..10718238 (- strand)
Length: 332
Type: CDS
Position: Chr02:10718989..10719373 (- strand)
Length: 385
Type: CDS
Position: Chr02:10719374..10719526 (- strand)
Length: 153
Type: five_prime_UTR


>Vigan.02G123600.01
CTCACATCTC ACATGCCATC ACCGACAGCG CCAGCTGCAA ACATTATGAT TCACACCGCC TCATCTCATT TCCTCTCCTC
TACGCTCCTC TCTCTTTACA CCCTTACCGT AACTTCATCA CAAACAGACA ATCTTTTATC GTAATGACGT GGCATGTTTT
ACTTGCGTCA CCACTTTTCT CTGCGGTGTG CTCCAGCGCA GGCGAACTTT TACCACGCGC TTTGCTTTTG TTTTCTTTAT
GCCCGTTTCT CCAACTTCAC ACTCGAACCG CTCCTTTTAT TGAACTCCTC AACCCCAATT TACTCTGTGC TTACTCATTC
CTATCCAAAG CCTCTTCTTA TTCTCCATTT TCTTCTTCTT GTGCTATCGG TGACGAGCAT TATGGCCTCA AGGGCAGTGT
TATTGTTGGC TTTGTGTGTG CTTCCGGCGA TGGTTGTGGC CATTCGCCCA GCCAAGAACC CTTTTTCCGT GAAGGGTCGC
GTCTATTGTG ACCGTTGCCG TGCTGGTTTT GAGACATCTG CAACCACCTA CATTGCTGGT GCGGAGGTTA TGTTGCAATG
CAAGAGCAGG ACGACCAACG AGGTTGTGTA CACAAAGAAT GGGAAGACTG ATTCGAGCGG AGCATACACA ATATACGTGG
ATGAAGATCA TGCAGATGAG GTCTGCAATG CTAAGCTTGT GAGCAGTCCT CACCCTGAAT GCAGGGAAGT GACCCCTGGC
CGTGACGAAG CCCTTGTTAT TCTCACCCGC TACAATGGCA TTGCCTCCGA CGACAGGTAC GCCAATGCCA TGGGATTCAT
GTCTCAGGAT GTTGCTGCTG GCTGTGCTGA GGTCCTCAGG CAATACCAGG AGTTCGACAA TGAGAACTAA TTAATTAATT
GATTGATTTC AGTATATTAT CACTATCTAC TTTCGTTTTG GGTTTCCTCA TGTCTATTTA ATTCAATCTT GATGTGGAGT
GTTATCTCGA CATTTTCATA TTATGTTATA TATAATATAT ATGTTGATGG ACCCTGCTTA AATATATTAT TACATCAAGA
TCTGTCTTGG ACTTTGAGGT GTGTTGTTTT TCGTTGAAGG TGCTTTTCCT TGAGATTATA CTGATAATAG ACTTGATTGT
GAAATAAATC AACATTTTCT CATATTTATG GCTTTGATGA TTAAGTTTTC TGCCCTTTGG TGGCGGTTAA AGGTTCCTGC
ATTTTTTTCC TTACAA

>Vigan.02G123600.01
ATGTTTTACT TGCGTCACCA CTTTTCTCTG CGGTGTGCTC CAGCGCAGGC GAACTTTTAC CACGCGCTTT GCTTTTGTTT
TCTTTATGCC CGTTTCTCCA ACTTCACACT CGAACCGCTC CTTTTATTGA ACTCCTCAAC CCCAATTTAC TCTGTGCTTA
CTCATTCCTA TCCAAAGCCT CTTCTTATTC TCCATTTTCT TCTTCTTGTG CTATCGGTGA CGAGCATTAT GGCCTCAAGG
GCAGTGTTAT TGTTGGCTTT GTGTGTGCTT CCGGCGATGG TTGTGGCCAT TCGCCCAGCC AAGAACCCTT TTTCCGTGAA
GGGTCGCGTC TATTGTGACC GTTGCCGTGC TGGTTTTGAG ACATCTGCAA CCACCTACAT TGCTGGTGCG GAGGTTATGT
TGCAATGCAA GAGCAGGACG ACCAACGAGG TTGTGTACAC AAAGAATGGG AAGACTGATT CGAGCGGAGC ATACACAATA
TACGTGGATG AAGATCATGC AGATGAGGTC TGCAATGCTA AGCTTGTGAG CAGTCCTCAC CCTGAATGCA GGGAAGTGAC
CCCTGGCCGT GACGAAGCCC TTGTTATTCT CACCCGCTAC AATGGCATTG CCTCCGACGA CAGGTACGCC AATGCCATGG
GATTCATGTC TCAGGATGTT GCTGCTGGCT GTGCTGAGGT CCTCAGGCAA TACCAGGAGT TCGACAATGA GAACTAA

>Vigan.02G123600.01
MFYLRHHFSL RCAPAQANFY HALCFCFLYA RFSNFTLEPL LLLNSSTPIY SVLTHSYPKP LLILHFLLLV LSVTSIMASR
AVLLLALCVL PAMVVAIRPA KNPFSVKGRV YCDRCRAGFE TSATTYIAGA EVMLQCKSRT TNEVVYTKNG KTDSSGAYTI
YVDEDHADEV CNAKLVSSPH PECREVTPGR DEALVILTRY NGIASDDRYA NAMGFMSQDV AAGCAEVLRQ YQEFDNEN*