GBrowse Details

Vigan.02G131200.01

Basic Information:
Name: Vigan.02G131200.01
Multiple alignment
Variant Information
Position: Chr02:11732833..11735743 (+ strand)
Length: 2911
Functional Information:
Description: Similar to Thioredoxin superfamily protein isoform 3. [XP_007019024.1, Theobroma cacao]
InterPro: Glutaredoxin-like (IPR008554)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.31,7.92,10.69,15.37,12.45,7.59,5.79,7.13
Arabidopsis thaliana homolog: AT4G08280.1
Automatic updates:
Name: NM_001250127 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306069 (LOC100306069), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:11732833..11732921 (+ strand)
Length: 89
Type: five_prime_UTR
Position: Chr02:11732922..11733164 (+ strand)
Length: 243
Type: CDS
Position: Chr02:11733250..11733339 (+ strand)
Length: 90
Type: CDS
Position: Chr02:11735396..11735476 (+ strand)
Length: 81
Type: CDS
Position: Chr02:11735477..11735743 (+ strand)
Length: 267
Type: three_prime_UTR


>Vigan.02G131200.01
GTAAAATGGG CTTTTGCAAC AAAGCCTATG GTGTATATGT AAAGTTGGGC ATAAGCTGAG AGAAAATTTG AGTTGTGTGG
AAGAGAAGCA TGGTAGTGGG AAGTGCTTTA GGAGCTTTTG CAGTAGCAAG GCCATCGCCA CTTTTGTTGT TTAGAGGACA
AAAGGCTTTC AAATTCAGAC CTCTGTCGTC TTCATCTTCG TCTGCCGAAC CTTCTAGAAA GCTTGTTCTC TACTCTAAAC
CAGGTTGCTG TTTGTGCGAT GGCCTTAAAG AAAAGCTTCA TGCTGCATTC TTACTGGCCG GTCCCGATTC ACTTAACGAC
GTTGATTTGC AGATAAGGGA TATAACCAGC AATCCCGAGT GGGAAAATGC TTATCAATAC GAGATACCTG TGTTGGCTAA
GGTGCTTTCC GATGGCACCG AGGTGGCTTT ACCACGATTG TCCCCACGTC TAGGAGTGGA GCTCCTCCAT AAGAAGATAG
CGGCTGCTCT GAAACAACAA TAAAGGTGTC TCAGTTTTTG TTTTGTAACT TTACATTTAC CATTTAAAAA CCATTTTTGT
AAATTATATT TGCTGTTTTT CATTATTCTT TTAAGTTTTC TGTGAAGTAT AGTGTATGAA TAAATCAAAT ACATAAAGCC
GCCTCTGATG TGTGGAAGTT GCACAAACAT ATACTCACTA ACACCGAAGA AGTTCCTTAC ATATTAAAAA TTAGAGGAAA
GTTTAATGCA TTTTCTTACG TCTCTGAAAC ACTGTATAAC AATGATCTTT 

>Vigan.02G131200.01
ATGGTAGTGG GAAGTGCTTT AGGAGCTTTT GCAGTAGCAA GGCCATCGCC ACTTTTGTTG TTTAGAGGAC AAAAGGCTTT
CAAATTCAGA CCTCTGTCGT CTTCATCTTC GTCTGCCGAA CCTTCTAGAA AGCTTGTTCT CTACTCTAAA CCAGGTTGCT
GTTTGTGCGA TGGCCTTAAA GAAAAGCTTC ATGCTGCATT CTTACTGGCC GGTCCCGATT CACTTAACGA CGTTGATTTG
CAGATAAGGG ATATAACCAG CAATCCCGAG TGGGAAAATG CTTATCAATA CGAGATACCT GTGTTGGCTA AGGTGCTTTC
CGATGGCACC GAGGTGGCTT TACCACGATT GTCCCCACGT CTAGGAGTGG AGCTCCTCCA TAAGAAGATA GCGGCTGCTC
TGAAACAACA ATAA

>Vigan.02G131200.01
MVVGSALGAF AVARPSPLLL FRGQKAFKFR PLSSSSSSAE PSRKLVLYSK PGCCLCDGLK EKLHAAFLLA GPDSLNDVDL
QIRDITSNPE WENAYQYEIP VLAKVLSDGT EVALPRLSPR LGVELLHKKI AAALKQQ*