GBrowse Details

Vigan.02G132000.01

Basic Information:
Name: Vigan.02G132000.01
Multiple alignment
Variant Information
Position: Chr02:11822836..11826663 (+ strand)
Length: 3828
Functional Information:
Description: Similar to Uncharacterized protein. [I1KA85, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Drug/metabolite transporter (IPR000620)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.02,4.16,12.86,6.62,2.86,3.02,19.47
Automatic updates:
Name: NM_001254674 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100812537 (LOC100812537), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:11822836..11822949 (+ strand)
Length: 114
Type: five_prime_UTR
Position: Chr02:11822950..11823161 (+ strand)
Length: 212
Type: CDS
Position: Chr02:11823271..11823333 (+ strand)
Length: 63
Type: CDS
Position: Chr02:11825152..11825512 (+ strand)
Length: 361
Type: CDS
Position: Chr02:11825605..11825769 (+ strand)
Length: 165
Type: CDS
Position: Chr02:11825849..11826000 (+ strand)
Length: 152
Type: CDS
Position: Chr02:11826145..11826289 (+ strand)
Length: 145
Type: CDS
Position: Chr02:11826290..11826663 (+ strand)
Length: 374
Type: three_prime_UTR


>Vigan.02G132000.01
GCAATTTGTC TTAATCATTA CCCTTTATGT TTATAAGCAC GACCACTCCA TGCACTTCAG AGTACATCGC TCTAAGCGTT
ACACAATTTT TCATATTGTT TCCAACACAA AAATATGGAA CAACACTGTC GTTGTGCTAG TTTTGGAAGC AACTTCAGTA
AGGCAAAGCC TTATCTGTTA ACGGTCGGAC TTCAGTTTGG GTTCGCCGGA GCTCTCATCT TCTCCGTCGC CAGTCTCAAC
CATGGAATGA ATCGTTACGT TTTCGTCGTC TATCGTAATG CCATCGCTGC TTTGGCCCTG GCTCCTTTTG CATTGATTTT
TGAGAGGAAA ATTAGGCCGA AGATAACACT CCCTGTCTTC TTGCAGATAA TGGCACTCGG ATTTGTGGAA CCAGTGATTG
ACCAGGGCTT CACTTTCTTG GGAATGCAAT ACACATCAGC TTCGTTTACC TCTGCCATAA TGAATGCCGT GCCTTCTGTG
ACTTTTGTGC TAGCCGTAAT TCTAAGGTTA GAGCGTGTAA ATGTTAAGGA AATAAGGAGC CTAGCGAAGG TGATTGGGAC
ATTGATCACA TTTTCAGGTG CTTTGTTAAT GACACTTTAC AAAGGTCCTG AATTTAACCT ATTTCATTCT GCAAACGCAA
CCCAAAACCA AGACGGAACT CACTCTCCAC AAGTTGTTAA ACATTGGCTC TCAGGGACTC TCTTTCTTCT CCTGGGTTGT
GTGGCTTGGT CATCTTTCTT CATTTTACAG TCCATAGCAC TGAAAAGGTA TCCAGCAGAA TTGTCTCTCT CTTCTTTGGT
GTGCTTATCT GGTGCCGTGC AAGCTAGTGT GGTGGCAATT ATTGCCACTC GTCATTCTGG GCTTGCGGCA TGGGCCTTGG
GCTGGGACTT CAGACTCTAC GGCCCTCTCT ACACGGGAAT TGTTACCTCT GGAATAACGT ATTATGCGCA AGGGTTGGTG
TTGCAAAGCA GGGGCCCGGT ATTTTTAACT GCCTTTAATC CTCTTTGCAT GGTCATAACC TGTGCTTTAG GCTCCTTCCT
TTTTGCAGAG CAACTTCACT TGGGCAGTAT CATCGGAGCT GTCATTATCG CATTGGGTCT GTACTTTGTG GTGTGGGGCA
AAGGCAAAGA CCATTCAGAC CCCACGCCAT CATCTCCTAC AGCAAAGCAA ATGGAGACAC AAAAATTGCC AATTTCTTCA
TCTGATATCT AACACAGGAT TCCAAAGGAA TTTGTGAATA GTGCGCTTTT GCTGCCTTCA AAATTGGCAA TAGTTATGTA
TTCCAATTTC TTGCTTTCGG TCTCCACATT CTAAAGGGAT AATCTCAGAT TGCTGCTACA AGCAATGCCA TTTTCTTTGC
TTTATTTTAT CATCCAAAAA GAAATCATAG CATCGTTTCA TGCGAAGATA AGCTTTTAAC CACCTTGTCT TCGGTGGTTC
ATTTGCTCTT CTCCAACAAT GAATAAACTT ATATCTTTCA ACTCGTATCT TTTTCAAGTA ATTTATAATT ATTTTCAAGT
GTTTTTTGAT CTTGATGCTT GTTATGAATG ATCAATCTAT TCTGAAATTA TCATGTCACA ATAAAT

>Vigan.02G132000.01
ATGGAACAAC ACTGTCGTTG TGCTAGTTTT GGAAGCAACT TCAGTAAGGC AAAGCCTTAT CTGTTAACGG TCGGACTTCA
GTTTGGGTTC GCCGGAGCTC TCATCTTCTC CGTCGCCAGT CTCAACCATG GAATGAATCG TTACGTTTTC GTCGTCTATC
GTAATGCCAT CGCTGCTTTG GCCCTGGCTC CTTTTGCATT GATTTTTGAG AGGAAAATTA GGCCGAAGAT AACACTCCCT
GTCTTCTTGC AGATAATGGC ACTCGGATTT GTGGAACCAG TGATTGACCA GGGCTTCACT TTCTTGGGAA TGCAATACAC
ATCAGCTTCG TTTACCTCTG CCATAATGAA TGCCGTGCCT TCTGTGACTT TTGTGCTAGC CGTAATTCTA AGGTTAGAGC
GTGTAAATGT TAAGGAAATA AGGAGCCTAG CGAAGGTGAT TGGGACATTG ATCACATTTT CAGGTGCTTT GTTAATGACA
CTTTACAAAG GTCCTGAATT TAACCTATTT CATTCTGCAA ACGCAACCCA AAACCAAGAC GGAACTCACT CTCCACAAGT
TGTTAAACAT TGGCTCTCAG GGACTCTCTT TCTTCTCCTG GGTTGTGTGG CTTGGTCATC TTTCTTCATT TTACAGTCCA
TAGCACTGAA AAGGTATCCA GCAGAATTGT CTCTCTCTTC TTTGGTGTGC TTATCTGGTG CCGTGCAAGC TAGTGTGGTG
GCAATTATTG CCACTCGTCA TTCTGGGCTT GCGGCATGGG CCTTGGGCTG GGACTTCAGA CTCTACGGCC CTCTCTACAC
GGGAATTGTT ACCTCTGGAA TAACGTATTA TGCGCAAGGG TTGGTGTTGC AAAGCAGGGG CCCGGTATTT TTAACTGCCT
TTAATCCTCT TTGCATGGTC ATAACCTGTG CTTTAGGCTC CTTCCTTTTT GCAGAGCAAC TTCACTTGGG CAGTATCATC
GGAGCTGTCA TTATCGCATT GGGTCTGTAC TTTGTGGTGT GGGGCAAAGG CAAAGACCAT TCAGACCCCA CGCCATCATC
TCCTACAGCA AAGCAAATGG AGACACAAAA ATTGCCAATT TCTTCATCTG ATATCTAA

>Vigan.02G132000.01
MEQHCRCASF GSNFSKAKPY LLTVGLQFGF AGALIFSVAS LNHGMNRYVF VVYRNAIAAL ALAPFALIFE RKIRPKITLP
VFLQIMALGF VEPVIDQGFT FLGMQYTSAS FTSAIMNAVP SVTFVLAVIL RLERVNVKEI RSLAKVIGTL ITFSGALLMT
LYKGPEFNLF HSANATQNQD GTHSPQVVKH WLSGTLFLLL GCVAWSSFFI LQSIALKRYP AELSLSSLVC LSGAVQASVV
AIIATRHSGL AAWALGWDFR LYGPLYTGIV TSGITYYAQG LVLQSRGPVF LTAFNPLCMV ITCALGSFLF AEQLHLGSII
GAVIIALGLY FVVWGKGKDH SDPTPSSPTA KQMETQKLPI SSSDI*